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13_1_20cm_4_scaffold_223

Search features with annotation key words

Displaying items 1-30 of 44 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_223_1
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

1..1266
DNA (1266bp) protein (422aa)
Tax=RBG_16_Actinobacteria_68_12_curated
13_1_20cm_4_scaffold_223_2
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

1281..2051
DNA (771bp) protein (257aa)
Oxidoreductase n=1 Tax=Paenibacillus terrae (strain HPL-003) RepID=G7VVI0_PAETH
short-chain dehydrogenase/reductase SDR Tax=RBG_16_Actinobacteria_67_10_curated
short-chain dehydrogenase/reductase SDR
13_1_20cm_4_scaffold_223_3
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(1986..2606)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Salsuginibacillus kocurii RepID=UPI00036290FE
UbiE/COQ5 family methyltransferase Tax=RBG_16_Actinobacteria_68_12_curated
UbiE/COQ5 family methyltransferase
13_1_20cm_4_scaffold_223_4
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(2599..3621)
DNA (1023bp) protein (341aa)
alanine racemase; K01775 alanine racemase [EC:5.1.1.1] Tax=RBG_16_Actinobacteria_67_10_curated
alanine racemase (EC:5.1.1.1)
Alanine racemase n=3 Tax=Streptomyces clavuligerus RepID=B5GNU0_STRC2
13_1_20cm_4_scaffold_223_5
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3621..4934)
DNA (1314bp) protein (438aa)
YjeF-related protein-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXV8_RUBXD
YjeF-related protein-like protein {ECO:0000313|EMBL:ABG03770.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" sour
YjeF-like protein
13_1_20cm_4_scaffold_223_6
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(4934..5299)
DNA (366bp) protein (122aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF
Holo-[acyl-carrier-protein] synthase n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X0I1_ACISM
holo-acyl-carrier-protein synthase
13_1_20cm_4_scaffold_223_7
Streptomyces sp. NRRL S-444, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5296..6072)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Streptomyces sp. CNT302 RepID=UPI00035FE36F
HAD family hydrolase {ECO:0000313|EMBL:KJY24041.1}; TaxID=1609134 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-444.;"
hydrolase
13_1_20cm_4_scaffold_223_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

6092..6481
DNA (390bp) protein (130aa)
Class I peptide chain release factor n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F4Z8_CONWI
Class I peptide chain release factor {ECO:0000313|EMBL:ADB48576.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Con
class I peptide chain release factor
13_1_20cm_4_scaffold_223_9
unknown

Not on your lists

6531..6923
DNA (393bp) protein (131aa)

This feature has no annotations

13_1_20cm_4_scaffold_223_10

Not on your lists

6936..7730
DNA (795bp) protein (265aa)
MIP family channel protein n=1 Tax=uncultured bacterium W5-102b RepID=H9BWJ6_9BACT
MIP family channel protein {ECO:0000313|EMBL:AFD03168.1}; TaxID=1130996 species="Bacteria; environmental samples.;" source="uncultured bacterium W5-102b.;"
tonoplast intrinsic protein (Aquaporin)
13_1_20cm_4_scaffold_223_11
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7758..9770
DNA (2013bp) protein (671aa)
Glycogen debranching enzyme (Glycogen debrancher) n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FCN5_SORC5
Glycogen debranching enzyme (Glycogen debrancher) {ECO:0000313|EMBL:CAN91681.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangi
glycogen debranching protein
13_1_20cm_4_scaffold_223_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(9780..11609)
DNA (1830bp) protein (610aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F8I1_CONWI
glucosamine/fructose-6-phosphate aminotransferase
13_1_20cm_4_scaffold_223_13
Eggerthella lenta, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11679..12941)
DNA (1263bp) protein (421aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=742768 species="Bacteri
Phosphoglucosamine mutase n=3 Tax=Eggerthella RepID=C8WMR6_EGGLE
phosphoglucosamine mutase
13_1_20cm_4_scaffold_223_14
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(12947..13342)
DNA (396bp) protein (132aa)
30S ribosomal protein S9 n=1 Tax=Gracilibacillus lacisalsi RepID=UPI0003706644
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source=
rpsI; 30S ribosomal protein S9
13_1_20cm_4_scaffold_223_15
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists


comp(13339..13776)
DNA (438bp) protein (146aa)
50S ribosomal protein L13 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F327_CONWI
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Con
50S ribosomal protein L13
13_1_20cm_4_scaffold_223_16
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(13798..14328)
DNA (531bp) protein (177aa)
hypothetical protein Tax=RBG_16_Actinobacteria_67_10_curated
13_1_20cm_4_scaffold_223_17
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14338..16080
DNA (1743bp) protein (581aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS61882.1}; TaxID=359131 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus.;"
13_1_20cm_4_scaffold_223_18
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16091..16675)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI000378B0EE
PE-PGRS family protein {ECO:0000313|EMBL:EWM12575.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
nitroreductase-like protein
13_1_20cm_4_scaffold_223_19
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16694..16960
DNA (267bp) protein (89aa)
Acylphosphatase {ECO:0000256|RuleBase:RU000553, ECO:0000256|SAAS:SAAS00255930}; EC=3.6.1.7 {ECO:0000256|RuleBase:RU000553};; TaxID=452652 species="Bacteria; Actinobacteria; Streptomycetales; Streptomy
Acylphosphatase n=1 Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4N4H2_KITSK
acyP2; putative acylphosphatase
13_1_20cm_4_scaffold_223_20
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(16984..18504)
DNA (1521bp) protein (507aa)
guaA; GMP synthase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=RBG_16_Actinobacteria_68_12_curated
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXU4_RUBXD rbh
13_1_20cm_4_scaffold_223_21
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18545..18679)
DNA (135bp) protein (45aa)
inosine 5''''-monophosphate dehydrogenase n=1 Tax=Flavobacteriaceae bacterium S85 RepID=UPI0002557BB3
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:
inosine-5''-monophosphate dehydrogenase
13_1_20cm_4_scaffold_223_22
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(18643..19920)
DNA (1278bp) protein (426aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L2N4_THERP
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:
13_1_20cm_4_scaffold_223_23
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(19963..20868)
DNA (906bp) protein (302aa)
1-phosphofructokinase; K00882 1-phosphofructokinase [EC:2.7.1.56] Tax=RBG_16_Actinobacteria_68_12_curated
1-phosphofructokinase n=1 Tax=Patulibacter medicamentivorans RepID=H0E0G7_9ACTN
1-phosphofructokinase
13_1_20cm_4_scaffold_223_24
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(20871..21797)
DNA (927bp) protein (309aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] Tax=RBG_16_Actinobacteria_68_12_curated
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F318_CONWI
13_1_20cm_4_scaffold_223_25
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22222..23130)
DNA (909bp) protein (303aa)
orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=RBG_16_Actinobacteria_64_13_curated
orotidine 5''-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] id=5096405 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
orotidine 5''-phosphate decarboxylase, subfamily 2
13_1_20cm_4_scaffold_223_26
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

comp(23235..23516)
DNA (282bp) protein (94aa)
nucleoid protein Hbs; K03530 DNA-binding protein HU-beta Tax=RBG_16_Acidobacteria_64_8_curated
hupA; transcriptional dual regulator HU-alpha; K03530 DNA-binding protein HU-beta id=5096515 bin=PER_GWF2_39_17 species=PER_GWE2_38_7 genus=PER_GWE2_38_7 taxon_order=PER_GWE2_38_7 taxon_class=PER_GWE2_38_7 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
nucleoid DNA-binding protein
13_1_20cm_4_scaffold_223_27
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23581..24138)
DNA (558bp) protein (186aa)
pyrE-1; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=RBG_16_Actinobacteria_64_13_curated
pyrE-1; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAB0_METCZ
13_1_20cm_4_scaffold_223_28
unknown

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comp(24135..24341)
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_20cm_4_scaffold_223_29
unknown

Not on your lists

comp(24331..24777)
DNA (447bp) protein (149aa)

This feature has no annotations

13_1_20cm_4_scaffold_223_30
Halovivax asiaticus, Halovivax, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24803..25630
DNA (828bp) protein (276aa)
Ribonuclease BN n=1 Tax=Halovivax asiaticus JCM 14624 RepID=M0BD73_9EURY
Ribonuclease BN {ECO:0000313|EMBL:ELZ08427.1}; TaxID=1227490 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halovivax.;" source="Halovivax asiaticus JCM 14624.;"
ribonuclease BN
Displaying items 1-30 of 44 in total

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