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13_1_20cm_4_scaffold_1442

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Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1442_1
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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337..1728
DNA (1392bp) protein (464aa)
Signal recognition particle protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AIB5_AZOBR rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospir
RNA-binding protein rbh
13_1_20cm_4_scaffold_1442_2
Acetobacter pasteurianus, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1772..2131
DNA (360bp) protein (120aa)
30S ribosomal protein S16 n=1 Tax=Acetobacter pasteurianus RepID=UPI0002D5062E
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=634452 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter
30S ribosomal protein S16
13_1_20cm_4_scaffold_1442_3
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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2157..2711
DNA (555bp) protein (185aa)
Ribosome maturation factor RimM n=1 Tax=alpha proteobacterium BAL199 RepID=A8TYV9_9PROT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium B
rimM; Ribosome maturation factor rimM
13_1_20cm_4_scaffold_1442_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3319..3702
DNA (384bp) protein (128aa)
50S ribosomal protein L19 n=1 Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G6A0S5_9PROT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; I
rplS; 50S ribosomal protein L19
13_1_20cm_4_scaffold_1442_5
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3738..5144
DNA (1407bp) protein (469aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM i
isopropylmalate isomerase n=1 Tax=Elioraea tepidiphila RepID=UPI00037C6E6D rbh
leuC; 3-isopropylmalate dehydratase, large subunit
13_1_20cm_4_scaffold_1442_6
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5157..5789
DNA (633bp) protein (211aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate is
3-isopropylmalate dehydratase small subunit n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NSZ8_AZOS1
leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
13_1_20cm_4_scaffold_1442_7
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5910..7028
DNA (1119bp) protein (373aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|H
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Meganema perideroedes RepID=UPI000379DDA3 rbh
13_1_20cm_4_scaffold_1442_8
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7035..7742)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E1440A
Uncharacterized protein {ECO:0000313|EMBL:ETX03002.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
isochorismatase hydrolase
13_1_20cm_4_scaffold_1442_9
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7983..9146
DNA (1164bp) protein (388aa)
Arabinose efflux permease family protein n=1 Tax=Pseudomonas sp. GM60 RepID=J3H226_9PSED
Membrane protein {ECO:0000313|EMBL:AJC16984.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
membrane protein
13_1_20cm_4_scaffold_1442_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(9112..9372)
DNA (261bp) protein (87aa)
PilT protein domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB77_9BACT
PilT protein domain protein {ECO:0000313|EMBL:EDY16265.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PilT domain-containing protein
13_1_20cm_4_scaffold_1442_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9543..9818)
DNA (276bp) protein (92aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
13_1_20cm_4_scaffold_1442_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9861..11030)
DNA (1170bp) protein (390aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IQX8_RHOP2
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ABD09382.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rh
Iron-containing alcohol dehydrogenase
13_1_20cm_4_scaffold_1442_13
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11194..12156
DNA (963bp) protein (321aa)
Lipoprotein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HM17_PSEUO
Uncharacterized protein {ECO:0000313|EMBL:ETM68827.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (st
hypothetical secreted protein
13_1_20cm_4_scaffold_1442_14
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12234..12584)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDE3_9BRAD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
hypothetical protein
13_1_20cm_4_scaffold_1442_15
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12681..13091)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037826CD
Uncharacterized protein {ECO:0000313|EMBL:KJC46943.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
hypothetical protein
13_1_20cm_4_scaffold_1442_16
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(13181..13495)
DNA (315bp) protein (105aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibact
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029F3_SOLUE
alkylhydroperoxidase
Displaying 16 items

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