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13_1_20cm_4_scaffold_12592

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_12592_1
Hippea maritima, Hippea, Desulfurellales, Deltaproteobacteria, Proteobacteria, Bacteria

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2..967
DNA (966bp) protein (322aa)
Elongation factor Tu n=1 Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LXU4_HIPMA
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=760142 species="Bacteria; Proteobacteria; Deltaproteobacter
translation elongation factor Tu
13_1_20cm_4_scaffold_12592_2
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists


1006..1311
DNA (306bp) protein (102aa)
30S ribosomal protein S10 n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=RS10_PELTS
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 Tax=RBG_16_RIF_CHLX_70_13_curated
rpsJ; 30S ribosomal protein S10
13_1_20cm_4_scaffold_12592_3
Paenibacillus sp. FSL R5-808, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


1308..1970
DNA (663bp) protein (221aa)
50S ribosomal protein L3 n=1 Tax=Patulibacter americanus RepID=UPI0003B466B0
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1227076 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="
50S ribosomal protein L3
13_1_20cm_4_scaffold_12592_4
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


1970..2677
DNA (708bp) protein (236aa)
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RBG_16_Chloroflexi_56_8_curated
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 id=24537567 bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
50S ribosomal protein L4
13_1_20cm_4_scaffold_12592_5
Thermus filiformis, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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2674..2994
DNA (321bp) protein (107aa)
50S ribosomal protein L23 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2K7_SPHTD
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=276 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus filiformis.;"
50S ribosomal protein L25
13_1_20cm_4_scaffold_12592_6
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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3048..3845
DNA (798bp) protein (266aa)
50S ribosomal protein L2 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THE1_9CHLR
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter
50S ribosomal protein L2
13_1_20cm_4_scaffold_12592_7
GWC1_CPR2_41_48, CPR2, Bacteria

Not on your lists


4014..4361
DNA (348bp) protein (116aa)
50S ribosomal protein L22 {ECO:0000313|EMBL:KKS08842.1}; TaxID=1618344 species="Bacteria; candidate division CPR2.;" source="candidate division CPR2 bacterium GW2011_GWC1_41_48.;"
50S ribosomal protein L22 id=2394496 bin=GWD1_TM7_39_7 species=Amycolicicoccus subflavus genus=Amycolicicoccus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD1_TM7_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D2_39_7
rplV; 50S ribosomal protein L22
13_1_20cm_4_scaffold_12592_8
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists


4362..5330
DNA (969bp) protein (323aa)
30S ribosomal protein S3 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=RS3_ROSS1
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RBG_16_Chloroflexi_50_9_curated
30S ribosomal protein S3
Novel Jill Banfield (10/17/14)
13_1_20cm_4_scaffold_12592_9
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

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5330..5617
DNA (288bp) protein (96aa)
50S ribosomal protein L16 n=1 Tax=Zymophilus raffinosivorans RepID=UPI000382938E
50S ribosomal protein L16
Tax=BJP_IG2102_Coriobacteriales_64_17
13_1_20cm_4_scaffold_12592_10
Streptomyces xiamenensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


5614..5934
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Kocuria sp. UCD-OTCP RepID=UPI0003778700
50S ribosomal protein L29 {ECO:0000313|EMBL:AKG43463.1}; TaxID=408015 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces xiamenensis.;"
rpmC; 50S ribosomal protein L29
13_1_20cm_4_scaffold_12592_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


5931..6218
DNA (288bp) protein (96aa)
30S ribosomal protein S17 n=1 Tax=Varibaculum cambriense RepID=UPI0003B7A9FC
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="V
rpsQ; 30S ribosomal protein S17
13_1_20cm_4_scaffold_12592_12
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6314..6682
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Thermincola potens (strain JR) RepID=D5XA93_THEPJ
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source
50S ribosomal protein L14
13_1_20cm_4_scaffold_12592_13
Entamoeba histolytica, Entamoeba, Eukaryota

Not on your lists


6689..7549
DNA (861bp) protein (287aa)
PREDICTED: 50S ribosomal protein L5, cyanelle-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C18319
Ribosomal protein L24, putative {ECO:0000313|EMBL:EMH73695.1}; TaxID=885319 species="Eukaryota; Amoebozoa; Archamoebae; Entamoebidae; Entamoeba.;" source="Entamoeba histolytica HM-1:IMSS-B.;"
50S ribosomal protein L5
13_1_20cm_4_scaffold_12592_14
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


7837..8058
DNA (222bp) protein (74aa)
30S ribosomal protein S8 n=6 Tax=Pelosinus fermentans RepID=I8SZ41_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1149862 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans B4.;
ribosomal protein S8
13_1_20cm_4_scaffold_12592_15
Desulfotomaculum hydrothermale, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8103..8627
DNA (525bp) protein (175aa)
50S ribosomal protein L6 n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8E8H6_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1121428 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" s
50S ribosomal protein L6
13_1_20cm_4_scaffold_12592_16
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8624..8977
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Thermincola potens (strain JR) RepID=D5XA99_THEPJ
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR
50S ribosomal protein L18
13_1_20cm_4_scaffold_12592_17
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


8977..9420
DNA (444bp) protein (148aa)
30S ribosomal protein S5 n=5 Tax=Acidaminococcus RepID=G4Q731_ACIIR
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococc
rpsE; 30S ribosomal protein S5
Displaying 17 items

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