ggKbase home page

13_1_20cm_4_scaffold_200_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_200_curated_1
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

1..651
DNA (651bp) protein (217aa)
apgM1; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 (EC:5.4.2.12)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037EE975
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_20cm_4_scaffold_200_curated_2
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

788..2887
DNA (2100bp) protein (700aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=HPPA2_MOOTA
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_200_curated_3
Thermoplasmatales archaeon I-plasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

2984..4912
DNA (1929bp) protein (643aa)
hypothetical protein n=1 Tax=euryarchaeote SCGC AAA261-G15 RepID=UPI0003771919
Uncharacterized protein {ECO:0000313|EMBL:EQB65887.1}; TaxID=667138 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; environmental samples.;" source="Thermoplasmatales archaeon I-plasma.;"
family 5 extracellular solute-binding protein
13_1_20cm_4_scaffold_200_curated_4
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4969..6033)
DNA (1065bp) protein (355aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SGD0_THEM7
oligopeptide/dipeptide ABC transporter ATPase
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADU51582.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
13_1_20cm_4_scaffold_200_curated_5
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6030..7172)
DNA (1143bp) protein (381aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TM18_9CHLR id=5224397 bin=16ft_combo_ws3_JS1 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Oligopeptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAQ69395.1}; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
dipeptide/oligopeptide/nickel ABC transporter ATPase
13_1_20cm_4_scaffold_200_curated_6
Thermococcus paralvinellae, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(7177..8247)
DNA (1071bp) protein (357aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HKG6_PYRSN
Dipeptide transport system permease protein DppC
Dipeptide transport system permease protein DppC {ECO:0000313|EMBL:AHF80982.1}; TaxID=582419 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus paralvinellae.;"
13_1_20cm_4_scaffold_200_curated_7
Aciduliprofundum sp. MAR08-339, Aciduliprofundum, Euryarchaeota, Archaea

Not on your lists

comp(8244..9263)
DNA (1020bp) protein (340aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HQ33_ACIS0
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:AGB05174.1}; Flags: Precursor;; TaxID=673860 species="Archaea; Euryarchaeota; Aciduliprofundum.;" source="Aciduliprofundum sp. (strain MAR08-339).;"
13_1_20cm_4_scaffold_200_curated_8
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


9487..10065
DNA (579bp) protein (193aa)
rpoE1; DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit E n=2 Tax=Methanomassiliicoccus RepID=U5Q1X5_9EURY
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_200_curated_9
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

10069..10260
DNA (192bp) protein (64aa)
DNA-directed RNA polymerase subunit E'' (EC:2.7.7.6)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035D5438
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_200_curated_10
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

10226..10771
DNA (546bp) protein (182aa)
UPF0218 protein MBGDF03_00759 n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7U0Y0_9EURY
hypothetical protein
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_20cm_4_scaffold_200_curated_11
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

10775..11329
DNA (555bp) protein (185aa)
Ribosomal protein S24E n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7UA95_9EURY
ribosomal protein S24e
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_20cm_4_scaffold_200_curated_12
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

11329..11514
DNA (186bp) protein (62aa)
30S ribosomal protein S27ae n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T568_9EURY
30S ribosomal protein S27ae
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_20cm_4_scaffold_200_curated_13
unknown

Not on your lists

11607..12356
DNA (750bp) protein (250aa)

This feature has no annotations

13_1_20cm_4_scaffold_200_curated_trna_1
unknown

Not on your lists

12382..12455
DNA (74bp)
transferRNA Arg
13_1_20cm_4_scaffold_200_curated_14

Not on your lists

12645..13076
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TQG8_METAC
Uncharacterized protein {ECO:0000313|EMBL:KKK74033.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
13_1_20cm_4_scaffold_200_curated_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13152..14336)
DNA (1185bp) protein (395aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KCZ71904.1}; EC=2.3.1.9 {ECO:0000313|EMBL:KCZ71904.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Acetyl-CoA acetyltransferase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7U3W3_9EURY
acetyl-CoA acetyltransferase family protein
13_1_20cm_4_scaffold_200_curated_16
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(14448..16475)
DNA (2028bp) protein (676aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037C73D4
hypothetical protein
Tax=RBG_16_Chloroflexi_57_8_curated
13_1_20cm_4_scaffold_200_curated_17
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

comp(16636..17007)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GH49_METPE
hypothetical protein
Tax=RBG_13_Bathyarchaeota_52_12_curated
13_1_20cm_4_scaffold_200_curated_18
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(17042..17626)
DNA (585bp) protein (195aa)
bifunctional deaminase-reductase domain-containing protein id=14631939 bin=bin9_gal15 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
bifunctional deaminase-reductase domain-containing protein
Tax=CSP1_3_Armatimonadetes
Displaying 19 items

View Taxonomy