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13_1_20cm_4_scaffold_2419_curated

Search features with annotation key words

Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2419_curated_1
unknown

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1..102
DNA (102bp) protein (34aa)

This feature has no annotations

13_1_20cm_4_scaffold_2419_curated_2
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(99..1472)
DNA (1374bp) protein (458aa)
Aminotransferase n=1 Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=A1SBQ2_SHEAM
aminotransferase, class III; 4-aminobutyrate aminotransferase
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_20cm_4_scaffold_2419_curated_3
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(1517..1921)
DNA (405bp) protein (135aa)
putative thioesterase (EC:3.-.-.-)
Thioesterase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SE86_LEPBA
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_20cm_4_scaffold_2419_curated_4
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(1967..2512)
DNA (546bp) protein (182aa)
anhydrase n=1 Tax=Streptomyces sp. 303MFCol5.2 RepID=UPI00036B3089
phenylacetic acid degradation protein PaaY
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_20cm_4_scaffold_2419_curated_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(2517..2999)
DNA (483bp) protein (161aa)
Glycine betaine aldehyde dehydrogenase (Fragment) n=3 Tax=mine drainage metagenome RepID=T1BGS5_9ZZZZ
NAD-dependent aldehyde dehydrogenase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_6
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3197..3889
DNA (693bp) protein (231aa)
LigA n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JUV7_BURP1
ligA; LigA protein
LigA {ECO:0000313|EMBL:ABA51051.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
13_1_20cm_4_scaffold_2419_curated_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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3927..4685
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML56_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_8
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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4759..5664
DNA (906bp) protein (302aa)
apurinic endonuclease Apn1 (EC:3.1.21.2)
Probable endonuclease 4 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UQY3_ROSS1
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_9
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(5594..5980)
DNA (387bp) protein (129aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

6076..6705
DNA (630bp) protein (210aa)
flavin reductase domain-containing FMN-binding protein id=24533226 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Paenisporosarcina sp. TG20 genus=Paenisporosarcina taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
conserved protein YwrF
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_11
Geobacillus caldoxylosilyticus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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6874..8211
DNA (1338bp) protein (446aa)
Isocitrate lyase n=2 Tax=Geobacillus RepID=C9RXH7_GEOSY
Isocitrate lyase {ECO:0000313|EMBL:GAJ39554.1}; TaxID=1220594 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus caldoxylosilyticus NBRC 107762.;"
isocitrate lyase
13_1_20cm_4_scaffold_2419_curated_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(8223..9446)
DNA (1224bp) protein (408aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_13
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

9536..10444
DNA (909bp) protein (303aa)
Thioredoxin reductase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q187_9FIRM
thioredoxin reductase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

10408..10842
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS38_KORVE
hypothetical protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_15
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(10846..11580)
DNA (735bp) protein (245aa)
Bacterio-opsin activator HTH domain protein n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8DEA0_HALXS
Bacterio-opsin activator HTH domain-containing protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_16
unknown

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11694..11948
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_20cm_4_scaffold_2419_curated_17
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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11994..12257
DNA (264bp) protein (88aa)
SelT/selW/selH selenoprotein; K07401 selenoprotein W-related protein id=14431434 bin=bin3_NC10 species=Methylobacillus flagellatus genus=Methylobacillus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
SelT/selW/selH selenoprotein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_18
unknown

Not on your lists

12292..12504
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_20cm_4_scaffold_2419_curated_19
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(12514..13542)
DNA (1029bp) protein (343aa)
Alcohol dehydrogenase n=1 Tax=uncultured prokaryote RepID=H5SL74_9ZZZZ
alcohol dehydrogenase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_20
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(13612..13878)
DNA (267bp) protein (89aa)
Translation initiation factor SUI1-related protein n=1 Tax=Halarchaeum acidiphilum MH1-52-1 RepID=U2YUU1_9EURY
translation initiation factor Sui1
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_21
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(13871..14779)
DNA (909bp) protein (303aa)
Transcription initiation factor IIB n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D304_METSW
Transcription initiation factor IIB
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_2419_curated_22
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(15129..16241)
DNA (1113bp) protein (371aa)
mmsA; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27)
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y4L8_SORCE
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Displaying 22 items

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