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13_1_20cm_4_scaffold_1360

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1360_1
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..137)
DNA (135bp) protein (45aa)
uncharacterized protein conserved in bacteria
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:BAO83315.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadac
13_1_20cm_4_scaffold_1360_2
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(150..941)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI00036AAE6F
Uncharacterized protein {ECO:0000313|EMBL:KJE76434.1}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium ac
hypothetical protein
13_1_20cm_4_scaffold_1360_3
unknown

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comp(1047..1214)
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_20cm_4_scaffold_1360_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1388..2428
DNA (1041bp) protein (347aa)
braC; Leu/Ile/Val-binding protein Tax=GWA2_Rokubacteria_73_35_curated
Probable Leu/Ile/Val-binding protein id=3013101 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Pelagibacter ubique genus=Candidatus Pelagibacter taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
braC; Leu/Ile/Val-binding protein
13_1_20cm_4_scaffold_1360_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2475..3296
DNA (822bp) protein (274aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Inner-membrane translocator id=3013107 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
inner-membrane translocator
13_1_20cm_4_scaffold_1360_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3308..4267
DNA (960bp) protein (320aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Inner-membrane translocator id=3013111 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
inner-membrane translocator
13_1_20cm_4_scaffold_1360_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4298..4843
DNA (546bp) protein (182aa)
LivG-like protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
LivG-like protein id=3013115 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Pelagibacter ubique genus=Candidatus Pelagibacter taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LivG-like protein
13_1_20cm_4_scaffold_1360_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4843..5547
DNA (705bp) protein (235aa)
braG; high-affinity branched-chain amino acid transport ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
Probable high-affinity branched-chain amino acid transport ATP-binding protein id=3013121 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Pelagibacter ubique genus=Candidatus Pelagibacter taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
braG; high-affinity branched-chain amino acid transport ATP-binding protein
13_1_20cm_4_scaffold_1360_9
unknown

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comp(5544..6110)
DNA (567bp) protein (189aa)

This feature has no annotations

13_1_20cm_4_scaffold_1360_10
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

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6196..8025
DNA (1830bp) protein (610aa)
dehydrogenase, E1 component; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] Tax=RBG_16_Chloroflexi_52_11_curated
pyruvate dehydrogenase (acetyl-transferring) (EC:1.2.4.1)
Acetoin dehydrogenase (TPP-dependent) beta chain id=2985634 bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium metallidurans genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1360_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(7986..8366)
DNA (381bp) protein (127aa)
id=4554997 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_1360_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(8363..8854)
DNA (492bp) protein (164aa)
UspA domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
UspA domain-containing protein id=3995090 bin=GWA2_Methylomirabilis_73_35 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1360_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(8909..9877)
DNA (969bp) protein (323aa)
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] Tax=GWC2_Rokubacteria_70_16_curated
Methylated-DNA--protein-cysteine methyltransferase id=4226144 bin=GWC2_Methylomirabilis_70_24 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
methylated-DNA--protein-cysteine methyltransferase
13_1_20cm_4_scaffold_1360_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(9874..10401)
DNA (528bp) protein (176aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNA polymerase, sigma-24 subunit, ECF subfamily id=4029898 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ECF subfamily RNA polymerase sigma-24 subunit
13_1_20cm_4_scaffold_1360_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(10492..10884)
DNA (393bp) protein (131aa)
glyoxalase/bleomycin resistance protein/dioxygenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
glyoxalase/bleomycin resistance protein/dioxygenase id=14626134 bin=bin7_NC10_sister species=Pandoraea sp. SD6-2 genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
lactoylglutathione lyase
13_1_20cm_4_scaffold_1360_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(10877..13249)
DNA (2373bp) protein (791aa)
putative ABC transporter permease YbbP; K02004 putative ABC transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Uncharacterized ABC-type transport system, permease component YbbP id=4815548 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative ABC transporter permease YbbP
13_1_20cm_4_scaffold_1360_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(13246..13947)
DNA (702bp) protein (234aa)
ybbA; ABC transporter ATPase (EC:3.6.3.-)
putative ABC transporter, ATPase component; K02003 putative ABC transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized ABC-type transport system, ATPase component id=2960764 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1360_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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13962..14576
DNA (615bp) protein (205aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
GDSL-like Lipase/Acylhydrolase id=4815550 bin=GWA2_Methylomirabilis_73_35 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
G-D-S-L family lipolytic protein
13_1_20cm_4_scaffold_1360_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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14639..15148
DNA (510bp) protein (170aa)
id=4762290 Tax=GWA2_Rokubacteria_70_23_curated
id=4762290 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_1360_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(15153..17780)
DNA (2628bp) protein (876aa)
lytic transglycosylase, catalytic; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lytic transglycosylase id=4793525 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transglycosylase slt domain-containing protein
13_1_20cm_4_scaffold_1360_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(17780..18493)
DNA (714bp) protein (238aa)
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative (Protein-PII) uridylyltransferase (EC:2.7.7.59)
uridylyltransferase id=4793526 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1360_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18490..20310)
DNA (1821bp) protein (607aa)
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] id=14625966 bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
uridylyltransferase
13_1_20cm_4_scaffold_1360_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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20421..21500
DNA (1080bp) protein (360aa)
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidinol-phosphate aminotransferase id=4429857 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidinol-phosphate aminotransferase
13_1_20cm_4_scaffold_1360_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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21500..21928
DNA (429bp) protein (143aa)
endoribonuclease L-PSP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Endoribonuclease L-PSP id=4472509 bin=GWA2_Methylomirabilis_73_35 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation inhibitor
13_1_20cm_4_scaffold_1360_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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21932..22876
DNA (945bp) protein (315aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] Tax=GWA2_Rokubacteria_73_35_curated
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
2-hydroxy-3-oxopropionate reductase id=4472507 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1360_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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22937..24124
DNA (1188bp) protein (396aa)
acyl-CoA dehydrogenase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
acyl-CoA dehydrogenase domain-containing protein id=14626979 bin=bin7_NC10_sister species=Novosphingobium sp. Rr 2-17 genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein
13_1_20cm_4_scaffold_1360_27
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(24128..25063)
DNA (936bp) protein (312aa)
Luciferase-like n=1 Tax=Frankia sp. (strain CcI3) RepID=Q2J9M1_FRASC
Uncharacterized protein {ECO:0000313|EMBL:ETW96391.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase-like protein
13_1_20cm_4_scaffold_1360_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(25071..26297)
DNA (1227bp) protein (409aa)
Extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Extracellular ligand-binding receptor id=4827657 bin=GWA2_Methylomirabilis_73_35 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Extracellular ligand-binding receptor
13_1_20cm_4_scaffold_1360_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26377..26793
DNA (417bp) protein (139aa)
hypothetical protein; K07068 Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3995088 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium 888 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_1360_30
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

26799..26903
DNA (105bp) protein (35aa)
thiolase Tax=GWA2_Rokubacteria_70_23_curated
Displaying 30 items

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