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13_1_20cm_4_scaffold_1387

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1387_1
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(1..786)
DNA (786bp) protein (262aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incert
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJD0_RHOM4
ribosome small subunit-dependent GTPase A
13_1_20cm_4_scaffold_1387_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(786..1082)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABL7_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_20cm_4_scaffold_1387_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1112..2044)
DNA (933bp) protein (311aa)
Putative proline dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABL8_GEMAT
Proline dehydrogenase {ECO:0000313|EMBL:AHG92070.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Proline dehydrogenase
13_1_20cm_4_scaffold_1387_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(2072..4207)
DNA (2136bp) protein (712aa)
fadJ; multifunctional fatty acid oxidation complex subunit alpha; K01782 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] Tax=RIFCS
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UB30_ANASK
fadJ; multifunctional fatty acid oxidation complex subunit alpha
13_1_20cm_4_scaffold_1387_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(4207..5472)
DNA (1266bp) protein (422aa)
fadI; acetyl-CoA acyltransferase (EC:2.3.1.16); K00632 acetyl-CoA acyltransferase [EC:2.3.1.16] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
fadI; acetyl-CoA acyltransferase (EC:2.3.1.16)
Acetyl-CoA acyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABM2_GEMAT
13_1_20cm_4_scaffold_1387_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5618..7111
DNA (1494bp) protein (498aa)
glycerol-3-phosphate dehydrogenase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Glycerol-3-phosphate dehydrogenase n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CJP9_MYXFH
glycerol-3-phosphate dehydrogenase
13_1_20cm_4_scaffold_1387_7
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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7126..7992
DNA (867bp) protein (289aa)
cytochrome C n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000378DB68
Cytochrome C {ECO:0000313|EMBL:KHK86588.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
class I cytochrome c
13_1_20cm_4_scaffold_1387_8
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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8026..8712
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIZ7_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:ACU60081.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source=
hypothetical protein
13_1_20cm_4_scaffold_1387_9
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8761..9033)
DNA (273bp) protein (91aa)
membrane protein n=1 Tax=Paenibacillus massiliensis RepID=UPI00036D9C2E
hypothetical protein Tax=RBG_16_Desulfobacca_60_12_curated
hypothetical protein
13_1_20cm_4_scaffold_1387_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9024..10025)
DNA (1002bp) protein (334aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_1387_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10012..11016)
DNA (1005bp) protein (335aa)
D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Blr7451 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89DI8_BRADU
hypothetical protein
13_1_20cm_4_scaffold_1387_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11138..12586)
DNA (1449bp) protein (483aa)
Major facilitator family transporter n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N611_ERYLH
major facilitator family transporter Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
major facilitator family transporter
13_1_20cm_4_scaffold_1387_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(12640..13779)
DNA (1140bp) protein (380aa)
deoxyhypusine synthase-like protein; K00809 deoxyhypusine synthase [EC:2.5.1.46] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Deoxyhypusine synthase n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NLS6_GLOVI id=5224706 bin=16ft_combo_ws3_JS1 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
deoxyhypusine synthase-like protein
13_1_20cm_4_scaffold_1387_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13776..15554)
DNA (1779bp) protein (593aa)
class V aminotransferase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
class V aminotransferase id=24461261 bin=RBG_19FT_COMBO_GAL15_69_19 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
class V aminotransferase
13_1_20cm_4_scaffold_1387_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

15615..15881
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABN2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_4_scaffold_1387_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

15878..16903
DNA (1026bp) protein (342aa)
iron-sulfur cluster binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein id=14627129 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
iron-sulfur cluster binding protein
13_1_20cm_4_scaffold_1387_17
unknown

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16900..17184
DNA (285bp) protein (95aa)

This feature has no annotations

13_1_20cm_4_scaffold_1387_18
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17177..18058)
DNA (882bp) protein (294aa)
putative phosphohydrolase; K07098 Tax=GWC2_Deltaproteobacteria_55_46b_curated
putative phosphohydrolase; K07098 id=15193185 bin=GWC2_NOV_55_46 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_NOV_55_46 organism_group=Proteobacteria
putative phosphohydrolase
13_1_20cm_4_scaffold_1387_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18055..19539)
DNA (1485bp) protein (495aa)
Peptidase M20 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHQ0_KORVE
peptidase M20 Tax=GWC2_Gemmatimonadetes_71_10_curated
peptidase M20
13_1_20cm_4_scaffold_1387_20
Bifidobacterium gallicum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19650..21047)
DNA (1398bp) protein (466aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=561180 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" so
Alpha amylase, catalytic domain protein n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NWL4_9BIFI
Ig domain-containing protein
13_1_20cm_4_scaffold_1387_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

21150..21707
DNA (558bp) protein (186aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA74_GEMAT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG92078.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
RNA polymerase sigma factor, sigma-70 family
13_1_20cm_4_scaffold_1387_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21700..22254
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA75_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glycoside hydrolase family 13 domain protein
13_1_20cm_4_scaffold_1387_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

22251..22805
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA76_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:AHG92076.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
Displaying 23 items

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