ggKbase home page

13_1_20cm_4_scaffold_2161

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2161_1
unknown

Not on your lists

comp(3..182)
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_20cm_4_scaffold_2161_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(238..1332)
DNA (1095bp) protein (365aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_2161_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1379..2242)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A779_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_20cm_4_scaffold_2161_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(2255..2827)
DNA (573bp) protein (191aa)
SNARE associated Golgi protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H6Q7_ANADF
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_20cm_4_scaffold_2161_5
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(2824..3282)
DNA (459bp) protein (153aa)
Tax=BJP_IG2069_Spirochaetales_48_31
13_1_20cm_4_scaffold_2161_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3339..4634)
DNA (1296bp) protein (432aa)
tow domain-containing protein (EC:3.6.-.-)
Tow domain protein: DNA-binding transcriptional activator of the SARP family n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K0T2_CUPNH
transcriptional activator domain-containing protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_2161_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

5173..7473
DNA (2301bp) protein (767aa)
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Q9_GEMAT
serine/threonine protein kinase Tax=GWC2_Gemmatimonadetes_71_10_curated
protein kinase
13_1_20cm_4_scaffold_2161_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7817..8299)
DNA (483bp) protein (161aa)
Blue-copper protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4M3_GEMAT
blue-copper protein Tax=GWC2_Gemmatimonadetes_71_10_curated
blue (type 1) copper domain protein
13_1_20cm_4_scaffold_2161_9
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8432..9589
DNA (1158bp) protein (386aa)
Beta-lactamase domain-containing protein n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9E439_9BACL
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:EJY55721.1}; TaxID=1200346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacil
rhodanese-like domain protein
13_1_20cm_4_scaffold_2161_10
unknown

Not on your lists

comp(9676..10011)
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_20cm_4_scaffold_2161_11
RBG_16_Chloroflexi_64_43_curated, Chloroflexi, Bacteria

Not on your lists

10149..12152
DNA (2004bp) protein (668aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I866_CALAS
hypothetical protein; K07114 uncharacterized protein Tax=RBG_16_Chloroflexi_64_43_curated
hypothetical protein
13_1_20cm_4_scaffold_2161_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12165..12668
DNA (504bp) protein (168aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC64_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase ECF-type sigma factor
13_1_20cm_4_scaffold_2161_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12652..13734
DNA (1083bp) protein (361aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG87978.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_4_scaffold_2161_14
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14120..15331)
DNA (1212bp) protein (404aa)
mopC; protein MopC Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical membrane protein id=24582159 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
13_1_20cm_4_scaffold_2161_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(15328..15876)
DNA (549bp) protein (183aa)
cytochrome c class I Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ABC-type Fe3+ transport system protein id=3999886 bin=GWA2_Ignavibacteria_55_11 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
putative cytochrome c subfamily
13_1_20cm_4_scaffold_2161_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(15869..16414)
DNA (546bp) protein (182aa)
hypothetical membrane protein Tax=CSP1_6_Rokubacteria
hypothetical membrane protein id=14626219 bin=bin7_NC10_sister species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin7_NC10_sister organism_group=NC10
Protein of unknown function DUF3341
13_1_20cm_4_scaffold_2161_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16411..17625)
DNA (1215bp) protein (405aa)
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
hybB; molybdopterin oxidoreductase; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] id=14429766 bin=bin3_NC10 species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_2161_18
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(17630..20614)
DNA (2985bp) protein (995aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] Tax=CSP1_5_NC10
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] id=14429767 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
putative oxidoreductase
13_1_20cm_4_scaffold_2161_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(20625..21197)
DNA (573bp) protein (191aa)
cytochrome c3 Tax=RBG_16_Gemmatimonadetes_66_8_curated
cytochrome c2 id=14426356 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
actA; menaquinol oxidoreductase complex ACIII, cytochrome c subunit ActA
13_1_20cm_4_scaffold_2161_20
unknown

Not on your lists

comp(21306..21776)
DNA (471bp) protein (157aa)

This feature has no annotations

13_1_20cm_4_scaffold_2161_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21784..22914)
DNA (1131bp) protein (377aa)
Mandelate racemase/muconate lactonizing protein; K02549 O-succinylbenzoate synthase [EC:4.2.1.113] Tax=GWC2_Gemmatimonadetes_71_10_curated
Mandelate racemase/muconate lactonizing protein n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CFI0_KOSOT
Mandelate racemase/muconate lactonizing protein
13_1_20cm_4_scaffold_2161_22
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(22895..24052)
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Paenibacillus barengoltzii G22 RepID=R9LL98_9BACL
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_20cm_4_scaffold_2161_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24064..24525)
DNA (462bp) protein (154aa)
Sarcosine oxidase (EC:1.5.3.1) Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035FCAF7
FAD dependent oxidoreductase
Displaying 23 items

View Taxonomy