ggKbase home page

13_1_20cm_4_scaffold_2337

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2337_1

Not on your lists

1..405
DNA (405bp) protein (135aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM83927.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=14427469 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
13_1_20cm_4_scaffold_2337_2
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

450..830
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=uncultured crenarchaeote 57a5 RepID=D4N726_9CREN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83233.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitr
13_1_20cm_4_scaffold_2337_3
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(904..1569)
DNA (666bp) protein (222aa)
transaldolase Tax=CSP1_1_Thaumarchaeota
transaldolase id=14427472 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
transaldolase
13_1_20cm_4_scaffold_2337_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(1609..2391)
DNA (783bp) protein (261aa)
putative transketolase C-terminal section (EC:2.2.1.1)
transketolase central region Tax=CSP1_1_Thaumarchaeota
transketolase central region id=14427473 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
13_1_20cm_4_scaffold_2337_5

Not on your lists

comp(2388..4055)
DNA (1668bp) protein (556aa)
Ribulose-phosphate 3-epimerase (TktA, tktB) {ECO:0000313|EMBL:AIF04380.1}; EC=2.2.1.1 {ECO:0000313|EMBL:AIF04380.1};; TaxID=1456050 species="Archaea; Thaumarchaeota; environmental samples.;" source="u
Putative Ribulose-phosphate 3 epimerase family protein n=1 Tax=uncultured marine crenarchaeote HF4000_ANIW141M18 RepID=B3T607_9ARCH rbh
putative ribulose-phosphate 3-epimerase
13_1_20cm_4_scaffold_2337_6
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

4163..4567
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D1G0_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EIJ65553.1}; TaxID=859350 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria B
hypothetical protein
13_1_20cm_4_scaffold_2337_7
unknown

Not on your lists

4659..5042
DNA (384bp) protein (128aa)

This feature has no annotations

13_1_20cm_4_scaffold_2337_8
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

5240..7024
DNA (1785bp) protein (595aa)
ATPase RIL Tax=CSP1_1_Thaumarchaeota
ATPase RIL id=14427478 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
hypothetical protein
13_1_20cm_4_scaffold_2337_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

7030..7854
DNA (825bp) protein (275aa)
hypothetical protein Tax=CSP1_1_Thaumarchaeota
hypothetical protein id=14427479 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
ribosomal protein L11 methyltransferase-like protein
13_1_20cm_4_scaffold_2337_10
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(8006..8506)
DNA (501bp) protein (167aa)
ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] Tax=CSP1_1_Thaumarchaeota
ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] id=14427481 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ribosomal-protein-alanine acetyltransferase
13_1_20cm_4_scaffold_2337_11
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

8586..9659
DNA (1074bp) protein (358aa)
membrane-associated Zn-dependent protease Tax=CSP1_1_Thaumarchaeota
membrane-associated Zn-dependent protease id=14427482 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
membrane-associated Zn-dependent protease
13_1_20cm_4_scaffold_2337_12
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(9651..10736)
DNA (1086bp) protein (362aa)
hypothetical protein Tax=CSP1_1_Thaumarchaeota
hypothetical protein id=14427483 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
hypothetical protein
13_1_20cm_4_scaffold_2337_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

10787..11395
DNA (609bp) protein (203aa)
orotate phosphoribosyltransferase (EC:2.4.2.10)
orotate phosphoribosyltransferase Tax=CSP1_1_Thaumarchaeota
orotate phosphoribosyltransferase id=14427484 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
13_1_20cm_4_scaffold_2337_14
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(11417..11980)
DNA (564bp) protein (188aa)
TATA-box-binding protein n=2 Tax=Nitrosopumilaceae RepID=A9A365_NITMS rbh
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
2-alkenal reductase
13_1_20cm_4_scaffold_2337_trna_1
unknown

Not on your lists

comp(12377..12450)
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_2337_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(12492..13127)
DNA (636bp) protein (212aa)
TENA/THI-4 domain-containing protein; K06137 pyrroloquinoline-quinone synthase [EC:1.3.3.11] Tax=CSP1_1_Thaumarchaeota
TENA/THI-4 domain-containing protein; K06137 pyrroloquinoline-quinone synthase [EC:1.3.3.11] id=14427485 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
TENA/THI-4 domain-containing protein
13_1_20cm_4_scaffold_2337_16
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

13340..14203
DNA (864bp) protein (288aa)
polyprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] Tax=CSP1_1_Thaumarchaeota
polyprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] id=14427486 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon rbh
Polyprenyl synthetase
13_1_20cm_4_scaffold_2337_17
Cenarchaeum symbiosum, Cenarchaeum, Cenarchaeales, Thaumarchaeota, Archaea

Not on your lists

comp(14193..15587)
DNA (1395bp) protein (465aa)
NADH-ubiquinone oxidoreductase, subunit N {ECO:0000313|EMBL:ABK78292.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABK78292.1};; TaxID=414004 species="Archaea; Thaumarchaeota; Cenarchaeales; Cenarchaeaceae; Cenarc
NADH-ubiquinone oxidoreductase subunit N (EC:1.6.5.3)
NADH-ubiquinone oxidoreductase, subunit N n=1 Tax=Cenarchaeum symbiosum (strain A) RepID=A0RY75_CENSY rbh
13_1_20cm_4_scaffold_2337_18
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(15597..17675)
DNA (2079bp) protein (693aa)
Proton-translocating NADH-quinone oxidoreductase, chain L {ECO:0000313|EMBL:CDI06263.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CDI06263.1};; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thauma
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUX1_9ARCH rbh
proton-translocating NADH-quinone oxidoreductase subunit L
13_1_20cm_4_scaffold_2337_19
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(17678..19240)
DNA (1563bp) protein (521aa)
Proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5)
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2E2Q7_9ARCH rbh
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:EPA05555.1}; TaxID=859192 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.
13_1_20cm_4_scaffold_2337_20
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(19240..19554)
DNA (315bp) protein (105aa)
NADH dehydrogenase subunit K {ECO:0000313|EMBL:EPA05552.1}; EC=1.6.99.5 {ECO:0000313|EMBL:EPA05552.1};; TaxID=859192 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus N
ndhE; NAD(P)H-quinone oxidoreductase subunit 4L (EC:1.6.5.-)
NADH dehydrogenase subunit K n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EM07_9ARCH
13_1_20cm_4_scaffold_2337_21
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(19526..20038)
DNA (513bp) protein (171aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AU45_9ARCH
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 {ECO:0000313|EMBL:CDI06266.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
13_1_20cm_4_scaffold_2337_22
Cenarchaeum symbiosum, Cenarchaeum, Cenarchaeales, Thaumarchaeota, Archaea

Not on your lists

comp(20031..20528)
DNA (498bp) protein (166aa)
NADH-ubiquinone oxidoreductase, subunit I {ECO:0000313|EMBL:ABK78287.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABK78287.1};; TaxID=414004 species="Archaea; Thaumarchaeota; Cenarchaeales; Cenarchaeaceae; Cenarc
NADH-ubiquinone oxidoreductase subunit I (EC:1.6.5.3)
NADH-ubiquinone oxidoreductase, subunit I n=1 Tax=Cenarchaeum symbiosum (strain A) RepID=A0RY70_CENSY rbh
13_1_20cm_4_scaffold_2337_23
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(20525..21643)
DNA (1119bp) protein (373aa)
NADH dehydrogenase (Quinone) n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CU06_9ARCH rbh
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:EGP93009.1}; TaxID=1001994 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitros
NADH dehydrogenase
13_1_20cm_4_scaffold_2337_24
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(21733..22866)
DNA (1134bp) protein (378aa)
NADH-quinone oxidoreductase subunit D {ECO:0000313|EMBL:CDI06269.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CDI06269.1};; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="
NADH-ubiquinone oxidoreductase subunit D (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit D n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUP4_9ARCH rbh
13_1_20cm_4_scaffold_2337_25
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(22869..23549)
DNA (681bp) protein (227aa)
NADH-ubiquinone oxidoreductase, subunit C {ECO:0000313|EMBL:CDI06270.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CDI06270.1};; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" sourc
NADH-ubiquinone oxidoreductase subunit C (EC:1.6.5.3)
NADH-ubiquinone oxidoreductase, subunit C n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUS2_9ARCH
13_1_20cm_4_scaffold_2337_26
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(23552..24079)
DNA (528bp) protein (176aa)
NADH-quinone oxidoreductase subunit B (EC:1.6.99.5); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=CSP1_1_Thaumarchaeota
NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D0G5_9ARCH rbh
NADH-quinone oxidoreductase subunit B
13_1_20cm_4_scaffold_2337_27
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(24123..24383)
DNA (261bp) protein (87aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 3 n=2 Tax=Candidatus Nitrosoarchaeum limnia RepID=F3KKV7_9ARCH
NADH-ubiquinone/plastoquinone oxidoreductase chain 3 {ECO:0000313|EMBL:EGG41958.1}; TaxID=886738 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" so
NADH-ubiquinone/plastoquinone oxidoreductase subunit 3
Displaying 28 items

View Taxonomy