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13_1_20cm_4_scaffold_306

Search features with annotation key words

Displaying items 1-30 of 38 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_306_1
unknown

Not on your lists

comp(1..423)
DNA (423bp) protein (141aa)

This feature has no annotations

13_1_20cm_4_scaffold_306_2
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

489..1274
DNA (786bp) protein (262aa)
Sigma-54 dependent transcriptional regulator n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08XY4_STIAD
Sigma-54 dependent transcriptional regulator {ECO:0000313|EMBL:ADO75527.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigm
sigma-54 dependent transcriptional regulator
13_1_20cm_4_scaffold_306_3
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1288..2268)
DNA (981bp) protein (327aa)
wcaG; nucleoside-diphosphate-sugar epimerase (EC:5.1.3.-) rbh
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002DC43D0 rbh
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:EIJ48162.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="
13_1_20cm_4_scaffold_306_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2294..3466
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002EE0CAA rbh
hop; type III effector Hrp-dependent outers protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
type III effector Hrp-dependent outer protein
13_1_20cm_4_scaffold_306_5
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3463..4089
DNA (627bp) protein (209aa)
aldolase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002ECE4A4 rbh
Putative aldolase {ECO:0000313|EMBL:BAL26961.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
putative aldolase
13_1_20cm_4_scaffold_306_6
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4079..6328)
DNA (2250bp) protein (750aa)
Exporter of the RND superfamily protein-like protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HEZ1_ANADF rbh
Exporter of the RND superfamily protein-like protein {ECO:0000313|EMBL:ABS27287.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacte
exporter of the RND superfamily protein-like protein
13_1_20cm_4_scaffold_306_7
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6416..7171
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HEZ0_ANADF
hypothetical protein Tax=RBG_16_Anaeromyxobacter_69_14_curated
hypothetical protein
13_1_20cm_4_scaffold_306_8
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7168..7941
DNA (774bp) protein (258aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HEY9_ANADF
hypothetical protein Tax=RBG_16_Anaeromyxobacter_69_14_curated
hypothetical protein
13_1_20cm_4_scaffold_306_9
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7851..8846)
DNA (996bp) protein (332aa)
PAP2 family protein Tax=RBG_16_Anaeromyxobacter_69_14_curated
PAP2 family protein id=3462343 bin=GWA1_Deltaproteobacteria_52_35 species=Bacteroides coprocola genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
PAP2 family protein
13_1_20cm_4_scaffold_306_10
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8870..10054
DNA (1185bp) protein (395aa)
Surface antigen (D15) n=1 Tax=uncultured bacterium RepID=K1ZY12_9BACT
surface antigen (D15) Tax=RBG_16_Anaeromyxobacter_69_14_curated
surface antigen (D15)
13_1_20cm_4_scaffold_306_11
Legionella massiliensis, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10048..11049)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=5 Tax=Legionella pneumophila RepID=Q5X8W9_LEGPA
Dehydrosqualene synthase {ECO:0000313|EMBL:CDZ77737.1}; TaxID=1034943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella massiliens
hypothetical protein
13_1_20cm_4_scaffold_306_12
Legionella fallonii, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11046..13007)
DNA (1962bp) protein (654aa)
Squalene--hopene cyclase {ECO:0000313|EMBL:CEG58976.1}; EC=5.4.99.17 {ECO:0000313|EMBL:CEG58976.1};; TaxID=1212491 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae
shc; Squalene--hopene cyclase (EC:5.4.99.17)
Squalene-hopene cyclase n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RL60_BLASD rbh
13_1_20cm_4_scaffold_306_13
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(13004..13996)
DNA (993bp) protein (331aa)
Putative Dihydroflavanol 4-reductase {ECO:0000313|EMBL:CBK40468.1}; EC=1.1.1.219 {ECO:0000313|EMBL:CBK40468.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.
putative dihydroflavanol 4-reductase (EC:1.1.1.219)
Putative Dihydroflavanol 4-reductase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PB59_9BACT
13_1_20cm_4_scaffold_306_14
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13993..14988)
DNA (996bp) protein (332aa)
Squalene-hopene cyclase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2HY33_9BURK
Squalene-hopene cyclase {ECO:0000313|EMBL:ESJ08416.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HP
Putative hopanoid-associated phosphorylase HpnG
13_1_20cm_4_scaffold_306_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14985..16001)
DNA (1017bp) protein (339aa)
radical SAM domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Fe-S protein, radical SAM family id=3818235 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM protein
13_1_20cm_4_scaffold_306_16
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16200..16571)
DNA (372bp) protein (124aa)
Cytochrome c class I n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J5S0_ANAD2
Cytochrome c class I {ECO:0000313|EMBL:ACL65017.1}; Flags: Precursor;; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaer
cytochrome C, class I
13_1_20cm_4_scaffold_306_17
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16568..16930)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B573D1
putative sulfite:cytochrome c oxidoreductase subunit B; K00406 cytochrome c oxidase cbb3-type subunit III Tax=RBG_16_Deltaproteobacteria_71_12_curated
cytochrome c class I
13_1_20cm_4_scaffold_306_18
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(16927..17946)
DNA (1020bp) protein (340aa)
Putative Sulfite:cytochrome c oxidoreductase, subunit A {ECO:0000313|EMBL:CBK43556.1}; EC=1.8.2.1 {ECO:0000313|EMBL:CBK43556.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospira
putative sulfite:cytochrome c oxidoreductase subunit A (EC:1.8.2.1)
Putative Sulfite:cytochrome c oxidoreductase, subunit A n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PJI2_9BACT
13_1_20cm_4_scaffold_306_19
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18028..18768)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TC96_9BRAD
Membrane protein {ECO:0000313|EMBL:KJC54430.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP8
hypothetical protein
13_1_20cm_4_scaffold_306_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(18765..19403)
DNA (639bp) protein (213aa)
RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D563_9BACT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
RNA polymerase sigma factor, sigma-70 family
13_1_20cm_4_scaffold_306_21
unknown

Not on your lists

comp(19400..19825)
DNA (426bp) protein (142aa)

This feature has no annotations

13_1_20cm_4_scaffold_306_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

19973..21064
DNA (1092bp) protein (364aa)
acetamidase/formamidase Tax=CSP1_6_Rokubacteria
acetamidase/formamidase id=14627591 bin=bin7_NC10_sister species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acetamidase/formamidase
13_1_20cm_4_scaffold_306_23
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21092..22117)
DNA (1026bp) protein (342aa)
Conserved uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q092P2_STIAD rbh
Uncharacterized protein {ECO:0000313|EMBL:KFE69192.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyal
hypothetical protein
13_1_20cm_4_scaffold_306_24
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22114..23202)
DNA (1089bp) protein (363aa)
YcaO-like fatty acid binding domain-containing protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8N280_CORCM
YcaO-like fatty acid binding domain-containing protein {ECO:0000313|EMBL:AFE06512.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcacea
YcaO-like fatty acid binding domain-containing protein
13_1_20cm_4_scaffold_306_trna_1
unknown

Not on your lists

comp(23156..23229)
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_306_25
unknown

Not on your lists

comp(23295..24056)
DNA (762bp) protein (254aa)

This feature has no annotations

13_1_20cm_4_scaffold_306_26
Ignavibacterium album, Ignavibacterium, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(24053..24505)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0ANL1_IGNAJ
Uncharacterized protein {ECO:0000313|EMBL:AFH50568.1}; TaxID=945713 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae; Ignavibacterium.;" source="Ignavibacteriu
hypothetical protein
13_1_20cm_4_scaffold_306_27
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(24540..25868)
DNA (1329bp) protein (443aa)
Glucose/sorbosone dehydrogenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQA8_SINAD
L-sorbosone dehydrogenase {ECO:0000313|EMBL:AIE85923.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas gins
L-sorbosone dehydrogenase
13_1_20cm_4_scaffold_306_28
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25879..26355)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B44B5E
Uncharacterized protein {ECO:0000313|EMBL:KFN44032.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryzite
hypothetical protein
13_1_20cm_4_scaffold_306_29
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(26974..28695)
DNA (1722bp) protein (574aa)
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
Putative uncharacterized protein id=3526206 bin=GWC2_Methylomirabilis_70_16 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
protein of unknown function DUF1800
Displaying items 1-30 of 38 in total

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