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13_1_20cm_4_scaffold_3332

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Displaying items 1-30 of 36 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_3332_1
unknown

Not on your lists

comp(3..113)
DNA (111bp) protein (37aa)

This feature has no annotations

13_1_20cm_4_scaffold_3332_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(119..877)
DNA (759bp) protein (253aa)
braG; high-affinity branched-chain amino acid ABC transporter ATP-binding protein (EC:3.6.3.27)
high-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F); K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
High-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F) id=1703893 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_3332_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(885..1646)
DNA (762bp) protein (254aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter related id=1703894 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_3332_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1649..2809)
DNA (1161bp) protein (387aa)
putative branched chain amino acid ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative branched chain amino acid ABC transporter substrate-binding protein id=4849842 bin=GWC2_Methylomirabilis_70_16 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative branched chain amino acid ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_3332_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(2806..3612)
DNA (807bp) protein (269aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWC2_Rokubacteria_70_16_curated
Inner-membrane translocator id=4849841 bin=GWC2_Methylomirabilis_70_16 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter permease
13_1_20cm_4_scaffold_3332_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3612..4490)
DNA (879bp) protein (293aa)
livM; branched-chain amino acid ABC transporter system, permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Branched-chain amino acid ABC transporter permease protein id=1703897 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
13_1_20cm_4_scaffold_3332_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4487..4957)
DNA (471bp) protein (157aa)
4-vinyl reductase 4VR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-vinyl reductase 4VR id=1703903 bin=GWA2_Methylomirabilis_73_35 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_3332_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4954..5694)
DNA (741bp) protein (247aa)
Opine dehydrogenase (EC:1.5.1.28) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NAD-dependent glycerol-3-phosphate dehydrogenase-like protein id=1703904 bin=GWA2_Methylomirabilis_73_35 species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative dehydrogenase
13_1_20cm_4_scaffold_3332_9
unknown

Not on your lists

6591..6767
DNA (177bp) protein (59aa)

This feature has no annotations

13_1_20cm_4_scaffold_3332_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7087..9207)
DNA (2121bp) protein (707aa)
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein (EC:1.17.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein (EC:1.17.1.4)
Xanthine dehydrogenase id=4849835 bin=GWC2_Methylomirabilis_70_16 species=Magnetospirillum sp. SO-1 genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_3332_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9153..11099)
DNA (1947bp) protein (649aa)
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] id=14628013 bin=bin7_NC10_sister species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2)
13_1_20cm_4_scaffold_3332_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11221..11649)
DNA (429bp) protein (143aa)
putative nucleic-acid-binding protein containing a Zn-ribbon Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=1703953 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative nucleic-acid-binding protein containing a Zn-ribbon
13_1_20cm_4_scaffold_3332_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(11646..12599)
DNA (954bp) protein (318aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=GWA2_Rokubacteria_70_23_curated
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase family protein id=4384724 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_3332_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12599..13768)
DNA (1170bp) protein (390aa)
acetyl-CoA acetyltransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Propanoyl-CoA C-acyltransferase id=4254074 bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
acetyl-CoA acetyltransferase
13_1_20cm_4_scaffold_3332_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13765..14238)
DNA (474bp) protein (158aa)
acyl dehydratase Tax=GWA2_Rokubacteria_70_23_curated
MaoC domain protein dehydratase id=4254070 bin=GWC2_Methylomirabilis_70_24 species=Thermoplasmatales archaeon SCGC AB-540-F20 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
acyl dehydratase
13_1_20cm_4_scaffold_3332_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14270..15436)
DNA (1167bp) protein (389aa)
acyl-CoA dehydrogenase domain protein Tax=GWA2_Rokubacteria_70_23_curated
Acyl-CoA dehydrogenase domain protein id=3457494 bin=GWF2_Methylomirabilis_70_14 species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
acyl-CoA dehydrogenase domain protein
13_1_20cm_4_scaffold_3332_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15433..16974)
DNA (1542bp) protein (514aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] id=14627495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
5-oxoprolinase (EC:3.5.2.9)
13_1_20cm_4_scaffold_3332_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17021..19114)
DNA (2094bp) protein (698aa)
hyuA; N-methylhydantoinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (ATP-hydrolyzing) id=4849827 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
N-methylhydantoinase
13_1_20cm_4_scaffold_3332_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19118..19843)
DNA (726bp) protein (242aa)
phophonate C-P lyase system transcriptional regulator PhnF, GntR family; K03710 GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, GntR family id=4849826 bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phophonate C-P lyase system transcriptional regulator PhnF, GntR family
13_1_20cm_4_scaffold_3332_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19921..21078)
DNA (1158bp) protein (386aa)
acyl-CoA dehydrogenase, short-chain specific (EC:1.3.99.2) id=14626067 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
acyl-CoA dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
acyl-CoA dehydrogenase
13_1_20cm_4_scaffold_3332_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

21140..22267
DNA (1128bp) protein (376aa)
acetamidase/formamidase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
acetamidase/formamidase id=14627591 bin=bin7_NC10_sister species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acetamidase/formamidase
13_1_20cm_4_scaffold_3332_22
unknown

Not on your lists

comp(22150..22494)
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_20cm_4_scaffold_3332_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

23121..24335
DNA (1215bp) protein (405aa)
ABC-3 protein; K02075 zinc/manganese transport system permease protein Tax=CSP1_6_Rokubacteria
ABC-3 protein; K02075 zinc/manganese transport system permease protein id=14627589 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
ABC-3 protein
13_1_20cm_4_scaffold_3332_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24391..25248)
DNA (858bp) protein (286aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=GWA2_Rokubacteria_73_35_curated
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] id=14626066 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
3-hydroxybutyryl-CoA dehydrogenase
13_1_20cm_4_scaffold_3332_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25274..25567)
DNA (294bp) protein (98aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_3332_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25593..26117)
DNA (525bp) protein (175aa)
adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase id=3474236 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_3332_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26265..26723
DNA (459bp) protein (153aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=3474240 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_3332_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26760..27422)
DNA (663bp) protein (221aa)
HAD family hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative hydrolase (HAD superfamily) id=3474242 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD family hydrolase
13_1_20cm_4_scaffold_3332_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27506..28279)
DNA (774bp) protein (258aa)
echA8_3; enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA dehydratase, EchA8_3 id=3474245 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_3332_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(28283..28600)
DNA (318bp) protein (106aa)
rhodanese-like protein Tax=GWA2_Rokubacteria_73_35_curated
Rhodanese domain protein id=3474250 bin=GWA2_Methylomirabilis_73_35 species=Kingella denitrificans genus=Kingella taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin biosynthesis protein MoeB
Displaying items 1-30 of 36 in total

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