ggKbase home page

13_1_20cm_4_scaffold_88

Search features with annotation key words

Displaying 29 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_88_1
Thermus aquaticus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(3..809)
DNA (807bp) protein (269aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A650_THEAQ
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EED10739.1}; Flags: Precursor;; TaxID=498848 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Ther
tetratricopeptide repeat domain-containing protein
13_1_20cm_4_scaffold_88_2
Criblamydia sequanensis, Criblamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

882..1667
DNA (786bp) protein (262aa)
Transcriptional regulatory, C terminal family protein n=3 Tax=Burkholderia thailandensis RepID=N0APD4_BURTH
Signal transduction response regulator {ECO:0000313|EMBL:CDR34226.1}; TaxID=340071 species="Bacteria; Chlamydiae; Chlamydiales; Criblamydiaceae; Criblamydia.;" source="Criblamydia sequanensis.;"
transcriptional regulatory, C terminal family protein
13_1_20cm_4_scaffold_88_3
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

1664..2725
DNA (1062bp) protein (354aa)
PBS lyase HEAT domain protein repeat-containing protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CH69_THET1
PBS lyase HEAT domain protein repeat-containing protein {ECO:0000313|EMBL:ACZ43090.1}; Flags: Precursor;; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC B
PBS lyase HEAT domain-containing protein repeat-containing protein
13_1_20cm_4_scaffold_88_4
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2722..4125
DNA (1404bp) protein (468aa)
Glycosyl transferase n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RP36_BLASD
Glycosyl transferase {ECO:0000313|EMBL:CCG02697.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain D
glycosyl transferase
13_1_20cm_4_scaffold_88_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4140..4784
DNA (645bp) protein (215aa)
upp; uracil phosphoribosyltransferase (EC:2.4.2.9); K00761 uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RBG_16_Gemmatimonadetes_66_8_curated
upp; uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEP3_GEMAT
13_1_20cm_4_scaffold_88_6
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

4866..5480
DNA (615bp) protein (205aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021K4_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:ABJ84385.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
hypothetical protein
13_1_20cm_4_scaffold_88_7
Kosmotoga olearia, Kosmotoga, Kosmotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

5477..6034
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CFF5_KOSOT
Uncharacterized protein {ECO:0000313|EMBL:ACR80364.1}; TaxID=521045 species="Bacteria; Thermotogae; Kosmotogales; Kosmotogaceae; Kosmotoga.;" source="Kosmotoga olearia (strain TBF 19.5.1).;"
hypothetical protein
13_1_20cm_4_scaffold_88_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

6126..6668
DNA (543bp) protein (181aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABI4_GEMAT
RNA polymerase ECF-type sigma factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase sigma factor, sigma-70 family
13_1_20cm_4_scaffold_88_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

6665..7294
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABI3_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_4_scaffold_88_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

7294..8718
DNA (1425bp) protein (475aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABI2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_4_scaffold_88_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8715..9494
DNA (780bp) protein (260aa)
UPI0003D7A767 related cluster n=3 Tax=Aminicenantes RepID=UPI0003D7A767
PBS lyase HEAT domain protein repeat-containing protein {ECO:0000313|EMBL:AHG87842.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PBS lyase HEAT domain protein repeat-containing protein
13_1_20cm_4_scaffold_88_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

9543..10145
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEE2_THET1
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
protein of unknown function DUF218
13_1_20cm_4_scaffold_88_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

10154..10693
DNA (540bp) protein (180aa)
putative ADP-ribose pyrophosphatase (EC:3.6.1.13); K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative ADP-ribose pyrophosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN1_GEMAT
NUDIX hydrolase
13_1_20cm_4_scaffold_88_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

10870..11517
DNA (648bp) protein (216aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN0_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated
RNA polymerase sigma factor, sigma-70 family
13_1_20cm_4_scaffold_88_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

11565..12059
DNA (495bp) protein (165aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_88_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

12100..13158
DNA (1059bp) protein (353aa)
holA; putative DNA polymerase III delta subunit (EC:2.7.7.7); K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
holA; putative DNA polymerase III delta subunit (EC:2.7.7.7)
Putative DNA polymerase III delta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM8_GEMAT
13_1_20cm_4_scaffold_88_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13155..14021
DNA (867bp) protein (289aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_88_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

14018..16618
DNA (2601bp) protein (867aa)
DNA mismatch repair protein MutS n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM6_GEMAT
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA mismatch repair protein mutS
13_1_20cm_4_scaffold_88_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

16615..17229
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1AQV2_9NEIS
TonB protein; K03832 periplasmic protein TonB Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
TonB family protein
13_1_20cm_4_scaffold_88_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17213..18598
DNA (1386bp) protein (462aa)
cbs; cystathionine beta-synthase (EC:4.2.1.22); K01697 cystathionine beta-synthase [EC:4.2.1.22] Tax=RBG_16_Gemmatimonadetes_66_8_curated
cbs; cystathionine beta-synthase (EC:4.2.1.22)
Cystathionine beta-synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM2_GEMAT
13_1_20cm_4_scaffold_88_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

18598..19629
DNA (1032bp) protein (344aa)
D-alanine/D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RBG_16_Gemmatimonadetes_66_8_curated
D-alanine--D-alanine ligase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2S942_HAHCH
D-alanine--D-alanine ligase
13_1_20cm_4_scaffold_88_22
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

19637..20464
DNA (828bp) protein (276aa)
rhomboid family protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Peptidase S54, rhomboid domain protein
Rhomboid family protein id=4982279 bin=GWA2_Elusimicrobia_66_18 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
13_1_20cm_4_scaffold_88_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

20589..21533
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEP5_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_20cm_4_scaffold_88_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21530..21730
DNA (201bp) protein (67aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_88_25

Not on your lists

21949..22464
DNA (516bp) protein (172aa)
Formaldehyde activating enzyme n=2 Tax=environmental samples RepID=Q4JIT8_9BACT
Formaldehyde activating enzyme {ECO:0000313|EMBL:AAY96673.1}; TaxID=333425 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC10-4.;"
formaldehyde-activating enzyme
13_1_20cm_4_scaffold_88_26

Not on your lists

22568..23446
DNA (879bp) protein (293aa)
methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5)
NADP-linked methylene tetrahydromethanopterin dehydrogenase n=1 Tax=uncultured bacterium BAC10-10 RepID=Q4JIQ0_9BACT
NADP-linked methylene tetrahydromethanopterin dehydrogenase {ECO:0000313|EMBL:AAY89264.1}; TaxID=333372 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC10-10.;"
13_1_20cm_4_scaffold_88_27

Not on your lists

23451..24386
DNA (936bp) protein (312aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BAC10-10 RepID=Q4JIP9_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAY89265.1}; TaxID=333372 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC10-10.;"
predicted butyrate kinase
13_1_20cm_4_scaffold_88_28

Not on your lists

24383..25528
DNA (1146bp) protein (382aa)
OrfY n=1 Tax=uncultured bacterium BAC10-10 RepID=Q4JIP8_9BACT
OrfY {ECO:0000313|EMBL:AAY89266.1}; TaxID=333372 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC10-10.;"
hypothetical protein
13_1_20cm_4_scaffold_88_29
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25525..25995
DNA (471bp) protein (157aa)
formylmethanofuran dehydrogenase subunit B (EC:1.2.99.5) Tax=RBG_16_Gammaproteobacteria_51_14_curated
formylmethanofuran dehydrogenase subunit B n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C59C2
formylmethanofuran dehydrogenase subunit B
Displaying 29 items

View Taxonomy