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13_1_40cm_scaffold_1580

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1580_1
Caldivirga maquilingensis, Caldivirga, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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comp(1..2010)
DNA (2010bp) protein (670aa)
Ribosomal protein S12/S23 n=1 Tax=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) RepID=A8MB80_CALMQ
30S ribosomal protein S12
Ribosomal protein S12/S23 {ECO:0000313|EMBL:ABW01170.1}; TaxID=397948 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Caldivirga.;" source="Caldivirga maquilingensis
13_1_40cm_scaffold_1580_2
RBG_16_Archaea_50_20_curated, Archaea

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comp(2326..2763)
DNA (438bp) protein (146aa)
NusA family KH domain protein n=1 Tax=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) RepID=A4YCR2_METS5
transcription elongation factor NusA-like protein; K02600 N utilization substance protein A Tax=RBG_16_Archaea_50_20_curated
transcription elongation factor NusA-like protein
13_1_40cm_scaffold_1580_3
RBG_16_Archaea_50_20_curated, Archaea

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comp(2763..3065)
DNA (303bp) protein (101aa)
50S ribosomal protein L30e n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYR6_METFV
50S ribosomal protein L30e; K02908 large subunit ribosomal protein L30e Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L30e
13_1_40cm_scaffold_1580_4
RBG_16_Archaea_50_20_curated, Archaea

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comp(3072..6917)
DNA (3846bp) protein (1282aa)
rpoA; DNA-directed RNA polymerase subunit A (EC:2.7.7.6) Tax=RBG_16_Archaea_50_20_curated
rpoA; DNA-directed RNA polymerase subunit A (EC:2.7.7.6)
DNA-directed RNA polymerase n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IC33_NITGG
13_1_40cm_scaffold_1580_5
RBG_16_Archaea_50_20_curated, Archaea

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comp(6920..10267)
DNA (3348bp) protein (1116aa)
rpoB; DNA-directed RNA polymerase subunit B (EC:2.7.7.6) Tax=RBG_16_Archaea_50_20_curated
rpoB; DNA-directed RNA polymerase subunit B (EC:2.7.7.6)
Putative DNA-directed RNA polymerase subunit B n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARL3_9ARCH
13_1_40cm_scaffold_1580_6
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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comp(10293..10562)
DNA (270bp) protein (90aa)
rpoH; DNA-directed RNA polymerase subunit H (EC:2.7.7.6) Tax=RBG_16_Bathyarchaeota_48_13_curated
DNA-directed RNA polymerase subunit H n=1 Tax=Desulfurococcus mucosus (strain ATCC 35584 / DSM 2162 / JCM 9187 / O7/1) RepID=E8R7R7_DESM0
DNA-directed RNA polymerase subunit H
13_1_40cm_scaffold_1580_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(10701..11852)
DNA (1152bp) protein (384aa)
Putative transposase, IS605 OrfB family n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFZ7_NITGG
transposase, IS605 OrfB family
Putative transposase, IS605 OrfB family {ECO:0000313|EMBL:AFU60326.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source=
13_1_40cm_scaffold_1580_8
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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11891..12850
DNA (960bp) protein (320aa)
putative DNA methylase Tax=CG_Ignavi_01
Putative DNA methylase id=3905982 bin=GWF2_Melioribacter_38_21 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
hypothetical protein
13_1_40cm_scaffold_1580_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(12971..13981)
DNA (1011bp) protein (337aa)
Phosphate/sulphate permease id=3122079 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphate/sulphate permease; K03306 inorganic phosphate transporter, PiT family Tax=GWA2_Rokubacteria_70_23_curated
pit; low-affinity phosphate transporter
13_1_40cm_scaffold_1580_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(13998..14549)
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CUC2_METMJ
hypothetical protein; K07220 hypothetical protein Tax=RBG_16_Euryarchaeota_41_19_curated
hypothetical protein
13_1_40cm_scaffold_1580_11
unknown

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comp(16283..16501)
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_40cm_scaffold_1580_12
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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17217..17696
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46BN6_METBF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB58246.1}; TaxID=1434106 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina b
13_1_40cm_scaffold_1580_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18426..19571
DNA (1146bp) protein (382aa)
Putative transposase, IS605 OrfB family n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFZ7_NITGG
transposase, IS605 OrfB family
Putative transposase, IS605 OrfB family {ECO:0000313|EMBL:AFU60326.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source=
13_1_40cm_scaffold_1580_trna_1
unknown

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19615..19716
DNA (102bp)
transferRNA
13_1_40cm_scaffold_1580_14
unknown

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20766..21272
DNA (507bp) protein (169aa)

This feature has no annotations

13_1_40cm_scaffold_1580_15
uncultured Acidilobus sp. JCHS, Acidilobus, Acidilobales, Thermoprotei, Crenarchaeota, Archaea

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21357..22211
DNA (855bp) protein (285aa)
Methyltransferase, FkbM family {ECO:0000313|EMBL:ESQ23965.1}; TaxID=1410576 species="Archaea; Crenarchaeota; Thermoprotei; Acidilobales; Acidilobaceae; Acidilobus; environmental samples.;" source="unc
13_1_40cm_scaffold_1580_16
unknown

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22400..22933
DNA (534bp) protein (178aa)

This feature has no annotations

Displaying 17 items

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