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13_1_40cm_scaffold_169

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_169_1
Geobacillus thermoleovorans, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1..1320
DNA (1320bp) protein (440aa)
RHS repeat-associated core domain protein n=1 Tax=Geobacillus kaustophilus GBlys RepID=U2Y7T8_GEOKU
hypothetical protein
Cell wall-associated protein {ECO:0000313|EMBL:GAJ57526.1}; TaxID=1406857 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus; Geobacillus thermoleovorans group.;" source="Geo
13_1_40cm_scaffold_169_2
unknown

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1586..1795
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_40cm_scaffold_169_3

Not on your lists

2959..3600
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI000371C4D2
peptidase M50
Peptidase M50 {ECO:0000313|EMBL:AJF60715.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
13_1_40cm_scaffold_169_4
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

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comp(3760..4542)
DNA (783bp) protein (261aa)
Probable tRNA pseudouridine synthase B {ECO:0000255|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000255|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000255|HAMAP-Rule:MF_01081}; Short=Psi5
Probable tRNA pseudouridine synthase B n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=TRUB_METKA
TruB; H/ACA RNA-protein complex component Cbf5p
13_1_40cm_scaffold_169_5
RBG_16_Archaea_50_20_curated, Archaea

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comp(4904..5200)
DNA (297bp) protein (99aa)
50S ribosomal protein L14e n=1 Tax=Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) RepID=D7D9Q9_STAHD
50S ribosomal protein L14e; K02875 large subunit ribosomal protein L14e Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L14
13_1_40cm_scaffold_169_6
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(5240..5974)
DNA (735bp) protein (245aa)
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] Tax=RBG_13_Bathyarchaeota_38_9_curated
cmk; cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=KCY_AERPE
13_1_40cm_scaffold_169_7
unknown

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comp(5971..6261)
DNA (291bp) protein (97aa)

This feature has no annotations

13_1_40cm_scaffold_169_8
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(6563..7162)
DNA (600bp) protein (200aa)
adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RBG_13_Bathyarchaeota_38_9_curated
adkA; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=KADA_AERPE
13_1_40cm_scaffold_169_9
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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comp(7162..8469)
DNA (1308bp) protein (436aa)
Protein translocase subunit SecY n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I7B2_NITGG
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
secY; preprotein translocase subunit SecY
13_1_40cm_scaffold_169_10
unknown

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comp(10302..10685)
DNA (384bp) protein (128aa)

This feature has no annotations

13_1_40cm_scaffold_169_11
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10816..20010)
DNA (9195bp) protein (3065aa)
YD repeat protein n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W2H9_DESAS
YD repeat-containing protein
YD repeat protein {ECO:0000313|EMBL:ACV63663.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain
13_1_40cm_scaffold_169_12
CG_Micra_05, Micraarchaeota, Archaea

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comp(21213..21635)
DNA (423bp) protein (141aa)
S-adenosylmethionine decarboxylase proenzyme; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] Tax=CG_Micra_05
S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E0V2_DICTD
S-adenosylmethionine decarboxylase
13_1_40cm_scaffold_169_13
RBG_16_Archaea_50_20_curated, Archaea

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22233..22733
DNA (501bp) protein (167aa)
30S ribosomal protein S13 n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=RS13_STAMF
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Archaea_50_20_curated
rps13p; 30S ribosomal protein S13
13_1_40cm_scaffold_169_14
RBG_16_Archaea_50_20_curated, Archaea

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22748..23440
DNA (693bp) protein (231aa)
30S ribosomal protein S4 n=1 Tax=Thermococcus sibiricus (strain MM 739 / DSM 12597) RepID=RS4_THESM
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Archaea_50_20_curated
rps4p; 30S ribosomal protein S4
13_1_40cm_scaffold_169_15
unknown

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23471..24016
DNA (546bp) protein (182aa)

This feature has no annotations

13_1_40cm_scaffold_169_16
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

24170..24805
DNA (636bp) protein (212aa)
rpoD; DNA-directed RNA polymerase subunit D; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_16_Archaea_50_20_curated
RNA polymerase insert n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BB81_9ARCH
RNA polymerase insert
13_1_40cm_scaffold_169_17
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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24802..25260
DNA (459bp) protein (153aa)
50S ribosomal protein L13 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJ17_PYRSN
50S ribosomal protein L13P
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=342949 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. (strain NA
13_1_40cm_scaffold_169_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


25257..25667
DNA (411bp) protein (137aa)
30S ribosomal protein S9 n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7I1_METSW
rps9p; ribosomal protein S9P Rps9p; K02996 small subunit ribosomal protein S9 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S9
13_1_40cm_scaffold_169_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


25915..26592
DNA (678bp) protein (226aa)
30S ribosomal protein S2 n=4 Tax=Methanobrevibacter RepID=RS2_METS3
rps2P; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_16_Archaea_50_20_curated
rps2P; 30S ribosomal protein S2
13_1_40cm_scaffold_169_20
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

26589..27437
DNA (849bp) protein (283aa)
MEMO1 family protein MK0963 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Y963_METKA
dioxygenase; K06990 Tax=RBG_13_Bathyarchaeota_46_16b_curated
dioxygenase
13_1_40cm_scaffold_169_21
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

27412..28434
DNA (1023bp) protein (341aa)
mevalonate kinase (EC:2.7.1.36)
Mevalonate kinase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGT0_NITGG
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_40cm_scaffold_169_22
GWF2_TM6_30_66, TM6, Bacteria

Not on your lists

29096..29623
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI00034C24BF
Isopentenyl-diphosphate Delta-isomerase Tax=GWF2_TM6_30_66
isopentenyl-diphosphate delta-isomerase
13_1_40cm_scaffold_169_23
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

29682..31010
DNA (1329bp) protein (443aa)
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88); K00054 hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] Tax=RBG_13_Bathyarchaeota_38_9_curated
3-hydroxy-3-methylglutaryl-coenzyme A reductase n=1 Tax=uncultured archaeon RepID=D1JD30_9ARCH
3-hydroxy-3-methylglutaryl-coenzyme A reductase
13_1_40cm_scaffold_169_24
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(30951..31751)
DNA (801bp) protein (267aa)
putative (S)-2,3-Di-O-farnesylgeranylglyceryl synthase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=RBG_13_Bathyarchaeota_38_9_curated
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase n=1 Tax=Caldisphaera lagunensis (strain DSM 15908 / JCM 11604 / IC-154) RepID=L0A834_CALLD
4-hydroxybenzoate polyprenyltransferase
13_1_40cm_scaffold_169_25
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

31920..32303
DNA (384bp) protein (128aa)
hypothetical protein; K03594 bacterioferritin Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Bacterioferritin id=1250209 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
13_1_40cm_scaffold_169_26
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(32320..32697)
DNA (378bp) protein (126aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.3) Tax=RBG_16_Thaumarchaeota_49_8_curated
rocG2; NAD-specific glutamate dehydrogenase RocG (EC:1.4.1.2)
glutamate dehydrogenase-like protein n=1 Tax=Paenibacillus larvae RepID=UPI0001F85EA8
13_1_40cm_scaffold_169_27
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(32646..33503)
DNA (858bp) protein (286aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.3) Tax=RBG_16_Thaumarchaeota_49_8_curated
gdhA; glutamate dehydrogenase (EC:1.4.1.3)
Glu/Leu/Phe/Val dehydrogenase, C terminal n=1 Tax=uncultured organism RepID=M1Q2T1_9ZZZZ
13_1_40cm_scaffold_169_28
RBG_16_Archaea_50_20_curated, Archaea

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33727..33897
DNA (171bp) protein (57aa)
Elongation factor 1-alpha n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICE8_NITGG
tuf; elongation factor 1-alpha Tax=RBG_16_Archaea_50_20_curated
translation elongation factor EF-1 alpha
Displaying 28 items

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