ggKbase home page

13_1_40cm_scaffold_1815

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1815_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..593)
DNA (591bp) protein (197aa)
Beta-phosphoglucomutase id=4367563 bin=GWA2_Methylomirabilis_73_35 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD family hydrolase Tax=GWA2_Rokubacteria_73_35_curated
HAD family hydrolase
13_1_40cm_scaffold_1815_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(590..1219)
DNA (630bp) protein (210aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UPF0637 protein HMPREF1013_00496 id=4622868 bin=GWC2_Methylomirabilis_70_24 species=Bacillus sp. 2_A_57_CT2 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_1815_3
unknown

Not on your lists

1336..1425
DNA (90bp) protein (30aa)

This feature has no annotations

13_1_40cm_scaffold_1815_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1474..2436
DNA (963bp) protein (321aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] id=14627557 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
NAD-dependent epimerase/dehydratase
13_1_40cm_scaffold_1815_5
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

2567..3841
DNA (1275bp) protein (425aa)
ABC transporter substrate binding protein Tax=GWA2_Elusimicrobia_69_24_curated
ABC-type dipeptide transport system, periplasmic component id=2250676 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
ABC transporter substrate binding protein
13_1_40cm_scaffold_1815_6
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

3855..4787
DNA (933bp) protein (311aa)
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Elusimicrobia_69_24_curated
ABC-type dipeptide/oligopeptide/nickel transport system, permease component id=2250631 bin=GWA2_Elusimicrobia_69_24 species=Rhizobium sp. CF080 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Peptide/opine/nickel uptake family ABC transporter, permease protein
13_1_40cm_scaffold_1815_7
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

4794..5606
DNA (813bp) protein (271aa)
Binding-protein-dependent transport systems inner membrane component id=2250630 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein Tax=GWA2_Elusimicrobia_69_24_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_1815_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5715..6143
DNA (429bp) protein (143aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=2250629 bin=GWA2_Elusimicrobia_69_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
13_1_40cm_scaffold_1815_9
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6230..7186
DNA (957bp) protein (319aa)
Oxidoreductase domain protein id=4865163 bin=GWA2_Planctomycetia_40_7 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
1-carboxy-3-chloro-3,4-dihydroxycyclohexa-1, 5-diene dehydrogenase {ECO:0000313|EMBL:KHE90215.1}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Bro
oxidoreductase domain-containing protein
13_1_40cm_scaffold_1815_10
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7188..8807
DNA (1620bp) protein (540aa)
glutamine--scyllo-inositol transaminase (EC:2.6.1.50) Tax=GWB2_Desulfobacterales_56_26_curated
glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
Glutamine--scyllo-inositol transaminase id=2164771 bin=GWB2_Desulfobacterales_56_26 species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
13_1_40cm_scaffold_1815_11
R_Elusimicrobia_39_32, Elusimicrobia, Bacteria

Not on your lists

8804..9514
DNA (711bp) protein (237aa)
WcaA; glycosyltransferases Tax=RIFCSPLOWO2_02_FULL_Elusimicrobia_39_32_curated
putative GT2 : distantly related to GDP-Man: Dol-P b-mannosyltransferase
putative dolichol-phosphate mannosyltransferase-putative membrane bound sugar transferase involved in LPS biosynthesis id=14632327 bin=bin9_gal15 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
13_1_40cm_scaffold_1815_12
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

9511..11013
DNA (1503bp) protein (501aa)
Protein involved in methylthiolation of isopentenylated A37 derivatives in tRNA {ECO:0000313|EMBL:KHE90216.1}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; C
Radical SAM domain protein id=2867542 bin=GWF2_Planctomycete_41_51 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
radical SAM domain-containing protein
13_1_40cm_scaffold_1815_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

11010..14045
DNA (3036bp) protein (1012aa)
putative hydrolase transmembrane protein id=14627427 bin=bin7_NC10_sister species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative hydrolase transmembrane protein Tax=CSP1_6_Rokubacteria
putative hydrolase transmembrane protein
13_1_40cm_scaffold_1815_14
unknown

Not on your lists

comp(14032..14229)
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_scaffold_1815_15
unknown

Not on your lists

comp(14241..14951)
DNA (711bp) protein (237aa)

This feature has no annotations

13_1_40cm_scaffold_1815_16
unknown

Not on your lists

comp(14941..15708)
DNA (768bp) protein (256aa)

This feature has no annotations

13_1_40cm_scaffold_1815_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

15775..16938
DNA (1164bp) protein (388aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing id=4519886 bin=GWC2_Methylomirabilis_70_24 species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
UDP-N-acetyl-D-glucosamine 2-epimerase Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_scaffold_1815_18
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(16946..17947)
DNA (1002bp) protein (334aa)
N-acetylneuraminate synthase {ECO:0000313|EMBL:AEU35850.1}; EC=2.5.1.56 {ECO:0000313|EMBL:AEU35850.1};; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella
N-acetylneuraminate synthase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8P1M5_GRAMM
N-acetylneuraminate synthase
13_1_40cm_scaffold_1815_19
R_OP11_Beckwithbacteria_49_39, Beckwithbacteria, Microgenomates, Bacteria

Not on your lists

comp(17944..19869)
DNA (1926bp) protein (642aa)
id=15191560 bin=GWC1_OP11_49_16_COMPLETE tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
id=15191560 Tax=RIFCSPHIGHO2_01_FULL_OP11_Beckwithbacteria_49_39_curated
13_1_40cm_scaffold_1815_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(19866..20489)
DNA (624bp) protein (208aa)
Transferase hexapeptide repeat containing protein id=3512099 bin=GWF2_Methylomirabilis_70_14 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hexapaptide repeat-containing transferase Tax=GWA2_Rokubacteria_70_23_curated
sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
13_1_40cm_scaffold_1815_21

Not on your lists

comp(20499..20873)
DNA (375bp) protein (125aa)
Acylneuraminate cytidylyltransferase n=1 Tax=Clostridium botulinum CFSAN001628 RepID=L1LR40_CLOBO
Marine sediment metagenome DNA, contig: S06H3_S25010 {ECO:0000313|EMBL:GAI57724.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
acylneuraminate cytidylyltransferase
13_1_40cm_scaffold_1815_22
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(21107..22093)
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA300-O17 RepID=UPI00037C5065
oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
oxidoreductase domain-containing protein
13_1_40cm_scaffold_1815_23
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(22090..23577)
DNA (1488bp) protein (496aa)
magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase (EC:1.14.13.81) Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
Radical SAM domain-containing protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3ACN8_9PROT
putative Fe-S oxidoreductase
13_1_40cm_scaffold_1815_24
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23570..24472)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F5B4_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDL00639.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospi
13_1_40cm_scaffold_1815_25
unknown

Not on your lists

comp(24447..24644)
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_scaffold_1815_26
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24641..26140)
DNA (1500bp) protein (500aa)
ABC transporter transmembrane region n=1 Tax=Desulfovibrio sp. X2 RepID=S7TJY6_9DELT
ABC transporter transmembrane region {ECO:0000313|EMBL:EPR37166.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" sourc
ABC transporter-like protein
Displaying 26 items

View Taxonomy