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13_1_40cm_scaffold_198

Search features with annotation key words

Displaying items 1-30 of 35 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_198_1
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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2..844
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1X1F2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDZ79622.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubi
NHL repeat-containing protein
13_1_40cm_scaffold_198_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1275..2048
DNA (774bp) protein (258aa)
phage integrase protein (DNA breaking and rejoining enzyme) Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_scaffold_198_trna_1
unknown

Not on your lists

1438..1510
DNA (73bp)
transferRNA
13_1_40cm_scaffold_198_3
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2365..3744)
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Paenibacillus polymyxa CR1 RepID=V5WQ84_PAEPO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHC18150.1}; TaxID=1429244 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa CR1.;"
13_1_40cm_scaffold_198_4
unknown

Not on your lists

comp(4013..4336)
DNA (324bp) protein (108aa)

This feature has no annotations

13_1_40cm_scaffold_198_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4610..4945)
DNA (336bp) protein (112aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2640540 bin=GWC2_Methylomirabilis_70_24 species=Magnaporthe poae genus=Magnaporthe taxon_order=Magnaporthales taxon_class=Sordariomycetes phylum=Ascomycota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_198_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5486..9634)
DNA (4149bp) protein (1383aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TPR repeat-containing adenylate/guanylate cyclase id=14625908 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_198_7
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9884..15523
DNA (5640bp) protein (1880aa)
Choline dehydrogenase and related flavoprotein n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SLH7_HAHCH
choline dehydrogenase-like flavoprotein rbh
Choline dehydrogenase and related flavoprotein {ECO:0000313|EMBL:ABC28497.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Ha
13_1_40cm_scaffold_198_8
Cyanothece sp. PCC 7822, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

16358..16957
DNA (600bp) protein (200aa)
Outer membrane protein n=1 Tax=Cyanothece sp. (strain PCC 7822) RepID=E0UH58_CYAP2
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:ADN15657.1}; Flags: Precursor;; TaxID=497965 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (stra
13_1_40cm_scaffold_198_9
unknown

Not on your lists

16975..17556
DNA (582bp) protein (194aa)

This feature has no annotations

13_1_40cm_scaffold_198_10
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(17791..18207)
DNA (417bp) protein (139aa)
GAF sensor hybrid histidine kinase {ECO:0000313|EMBL:ACL46924.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ACL46924.1};; TaxID=395961 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyano
GAF sensor hybrid histidine kinase n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HKT0_CYAP4
GAF sensor hybrid histidine kinase
13_1_40cm_scaffold_198_11
unknown

Not on your lists

comp(18322..18435)
DNA (114bp) protein (38aa)

This feature has no annotations

13_1_40cm_scaffold_198_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18444..18869)
DNA (426bp) protein (142aa)
Uncharacterized protein id=2811820 bin=GWC2_Methylomirabilis_70_24 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_scaffold_198_13
unknown

Not on your lists

19340..19579
DNA (240bp) protein (80aa)

This feature has no annotations

13_1_40cm_scaffold_198_14
unknown

Not on your lists

19560..19712
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_40cm_scaffold_198_15
unknown

Not on your lists

19712..19840
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_40cm_scaffold_198_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

20012..21685
DNA (1674bp) protein (558aa)
thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Phosphomethylpyrimidine synthase id=3222446 bin=GWC2_Methylomirabilis_70_16 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thiamine biosynthesis protein ThiC
13_1_40cm_scaffold_198_17
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21663..22832
DNA (1170bp) protein (390aa)
hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
Putative uncharacterized protein id=1974906 bin=GWD2_Deltaproteobacteria_55_8 species=Maritimibacter alkaliphilus genus=Maritimibacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_scaffold_198_18
unknown

Not on your lists

22838..23233
DNA (396bp) protein (132aa)

This feature has no annotations

13_1_40cm_scaffold_198_19
unknown

Not on your lists

comp(23261..23461)
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_scaffold_198_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23467..23739)
DNA (273bp) protein (91aa)
Two component transcriptional regulator id=4905366 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
motility response receiver histidine kinase
13_1_40cm_scaffold_198_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(24080..25018)
DNA (939bp) protein (313aa)
N-carbamyl-D-amino acid amidohydrolase id=4441117 bin=GWF2_Methylomirabilis_70_14 species=Thauera sp. 28 genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
N-carbamyl-D-amino acid amidohydrolase Tax=GWA2_Rokubacteria_70_23_curated
N-carbamoyl-D-amino acid hydrolase
13_1_40cm_scaffold_198_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(25015..26595)
DNA (1581bp) protein (527aa)
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein id=4507374 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
extracellular solute-binding protein, family 5 middle family protein 6
13_1_40cm_scaffold_198_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26621..27058)
DNA (438bp) protein (146aa)
ntrC; nitrogen regulation protein NR(I); K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative Nitrogen assimilation transcription regulatory protein (NtrC)(Synonyms:glnT, glnG) id=3222442 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
gnfM; nitrogen fixation master sigma-54-dependent transcriptional response regulator
13_1_40cm_scaffold_198_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(27042..27968)
DNA (927bp) protein (309aa)
ntrC; nitrogen regulation protein NR(I); K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative Nitrogen assimilation transcription regulatory protein (NtrC)(Synonyms:glnT, glnG) id=2650854 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_40cm_scaffold_198_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(27968..29044)
DNA (1077bp) protein (359aa)
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] Tax=RIFCSPLOWO2_12
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] id=14627408 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3)
13_1_40cm_scaffold_198_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(29041..30045)
DNA (1005bp) protein (335aa)
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] id=14627409 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
O-sialoglycoprotein endopeptidase, with actin-like ATPase domain (ygjD,gcp)
13_1_40cm_scaffold_198_27
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(30067..31320)
DNA (1254bp) protein (418aa)
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) id=14627410 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102)
13_1_40cm_scaffold_198_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(31334..32530)
DNA (1197bp) protein (399aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Uncharacterized protein id=4795609 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_198_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(32527..33411)
DNA (885bp) protein (295aa)
hypothetical protein; K09811 cell division transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative Cell division protein FtsX id=4608922 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Cell division protein FtsX
Displaying items 1-30 of 35 in total

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