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13_1_40cm_scaffold_3415

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3415_1
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..414
DNA (414bp) protein (138aa)
truB; tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) s
tRNA pseudouridine synthase B n=3 Tax=Burkholderia cenocepacia RepID=B4E7L3_BURCJ
13_1_40cm_scaffold_3415_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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411..1316
DNA (906bp) protein (302aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=861299 species="Bacteria; Gemmatimonad
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8P1_GEMAT
riboflavin biosynthesis protein RibF
13_1_40cm_scaffold_3415_3
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2889..3908
DNA (1020bp) protein (340aa)
Protein translocase subunit SecF n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SECF_GEMAT
secF; protein-export membrane protein SecF
Protein translocase subunit SecF; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM
13_1_40cm_scaffold_3415_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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3910..4680
DNA (771bp) protein (257aa)
putative DNase (EC:3.1.21.-); K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Uncharacterized deoxyribonuclease, TatD-related n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PHC9_9BACT
hydrolase, TatD family
13_1_40cm_scaffold_3415_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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4693..6375
DNA (1683bp) protein (561aa)
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE57_GEMAT
13_1_40cm_scaffold_3415_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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6375..6767
DNA (393bp) protein (131aa)
endoribonuclease l-psp; K07567 TdcF protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Endoribonuclease L-PSP, putative id=4679987 bin=GWA2_OP3_53_43 species=Synechococcus sp. PCC 7335 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
endoribonuclease l-psp
13_1_40cm_scaffold_3415_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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6764..7600
DNA (837bp) protein (279aa)
Peptidase M20 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AW5_SOLUE
hypothetical protein
Peptidase M20 {ECO:0000313|EMBL:ABJ81801.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacte
13_1_40cm_scaffold_3415_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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7585..8142
DNA (558bp) protein (186aa)
peptidase M20 (EC:3.5.1.14)
Peptidase M20 n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AAE5_COLFT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_3415_9
unknown

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8192..9478
DNA (1287bp) protein (429aa)

This feature has no annotations

13_1_40cm_scaffold_3415_10
unknown

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9475..10974
DNA (1500bp) protein (500aa)

This feature has no annotations

13_1_40cm_scaffold_3415_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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11045..11929
DNA (885bp) protein (295aa)
protein of unknown function DUF4382
Uncharacterized protein {ECO:0000313|EMBL:AHG89207.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3415_trna_1
unknown

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11973..12062
DNA (90bp)
transferRNA
13_1_40cm_scaffold_3415_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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12463..13527
DNA (1065bp) protein (355aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_3415_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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13605..13955
DNA (351bp) protein (117aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_scaffold_3415_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(13965..14876)
DNA (912bp) protein (304aa)
Threonine synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A850_GEMAT
threonine synthase
Threonine synthase {ECO:0000313|EMBL:AHG89128.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3415_15
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(15202..17721)
DNA (2520bp) protein (840aa)
aspartokinase/homoserine dehydrogenase (EC:1.1.1.3 2.7.2.4)
Aspartokinase/homoserine dehydrogenase {ECO:0000313|EMBL:BAH38409.1}; EC=1.1.1.3 {ECO:0000313|EMBL:BAH38409.1};; EC=2.7.2.4 {ECO:0000313|EMBL:BAH38409.1};; TaxID=379066 species="Bacteria; Gemmatimonad
Aspartokinase/homoserine dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A849_GEMAT
13_1_40cm_scaffold_3415_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(17726..18646)
DNA (921bp) protein (307aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|
Homoserine kinase n=1 Tax=Alicyclobacillus acidocaldarius (strain Tc-4-1) RepID=F8IG95_ALIAT
Homoserine kinase
13_1_40cm_scaffold_3415_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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18816..19865
DNA (1050bp) protein (350aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:000
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate semialdehyde dehydrogenase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDF1_CHLTF
13_1_40cm_scaffold_3415_18
unknown

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20001..20900
DNA (900bp) protein (300aa)

This feature has no annotations

13_1_40cm_scaffold_3415_19
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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20965..21219
DNA (255bp) protein (85aa)
Diacylglycerol kinase, catalytic region n=1 Tax=uncultured prokaryote RepID=H5SI45_9ZZZZ
diacylglycerol kinase catalytic subunit; K07029 Tax=RBG_16_Chloroflexi_57_8_curated
diacylglycerol kinase catalytic subunit
Displaying 20 items

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