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13_1_40cm_scaffold_417

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_417_1
unknown

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2..184
DNA (183bp) protein (61aa)

This feature has no annotations

13_1_40cm_scaffold_417_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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285..1844
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4T8_GEMAT
hypothetical protein Tax=RBG_16_Acidobacteria_70_10_curated
Ig domain protein group 2 domain protein
13_1_40cm_scaffold_417_3
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1950..3308
DNA (1359bp) protein (453aa)
O-antigen polymerase {ECO:0000313|EMBL:ACL06564.1}; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatiba
O-antigen polymerase family protein
13_1_40cm_scaffold_417_4
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3305..4225
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI00037C9ADD
polysaccharide deacetylase
polysaccharide deacetylase Tax=CG_Rhodocyc_01
13_1_40cm_scaffold_417_5
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4242..5354
DNA (1113bp) protein (371aa)
glycosyltransferase (EC:2.4.1.-)
Glycosyltransferase {ECO:0000313|EMBL:CAN99090.1}; EC=2.4.1.- {ECO:0000313|EMBL:CAN99090.1};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangia
Glycosyltransferase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G8Z2_SORC5
13_1_40cm_scaffold_417_6
GWA2_OP3_52_12_curated, Omnitrophica, Bacteria

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comp(5365..6570)
DNA (1206bp) protein (402aa)
hypothetical protein id=3653090 bin=GWA2_OP3_52_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein Tax=GWA2_OP3_52_12_curated
13_1_40cm_scaffold_417_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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6800..8629
DNA (1830bp) protein (610aa)
Putative carbamoyl transferase n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AN70_IGNAJ
Carbamoyltransferase
Carbamoyltransferase {ECO:0000313|EMBL:AHG93579.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_417_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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8602..9009
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00036316B3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG93578.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_417_9
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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9037..9195
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6YWB8_MELRP
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
hypothetical protein
13_1_40cm_scaffold_417_10
Synechococcus sp. WH 7805, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9192..9767)
DNA (576bp) protein (192aa)
BusL n=1 Tax=Saccharopolyspora pogona RepID=Q4JHQ7_9PSEU
Possible menaquinone biosynthesis methyltransferase {ECO:0000313|EMBL:EAR18302.1}; TaxID=59931 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechoc
ermC; type 11 methyltransferase
13_1_40cm_scaffold_417_11
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9949..11115
DNA (1167bp) protein (389aa)
Glycosyl transferase group 1 n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M2W2_GEODF
group 1 glycosyl transferase
Uncharacterized protein {ECO:0000313|EMBL:KJS03125.1}; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium B
13_1_40cm_scaffold_417_12
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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11112..12299
DNA (1188bp) protein (396aa)
Glycosyl transferase family 2 n=1 Tax=Geobacter sp. (strain M18) RepID=E8WT17_GEOS8
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADW13126.1}; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp.
13_1_40cm_scaffold_417_13
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(12247..13329)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PJB0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43484.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_scaffold_417_14
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(13268..14446)
DNA (1179bp) protein (393aa)
Protein involved in cellulose biosynthesis (CelD) n=1 Tax=Chthonomonas calidirosea T49 RepID=S0F001_9BACT
cellulose biosynthesis (CelD)-like protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
Protein involved in cellulose biosynthesis (CelD)
13_1_40cm_scaffold_417_15
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(14452..15951)
DNA (1500bp) protein (500aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00037BC665
O-antigen and teichoic acid export protein Tax=RBG_16_RIF03_38_10_curated
O-antigen and teichoic acid export protein
13_1_40cm_scaffold_417_16
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16191..16823)
DNA (633bp) protein (211aa)
putative glycosyltransferase (EC:2.4.-.-)
Putative glycosyltransferase {ECO:0000313|EMBL:BAH37627.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAH37627.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimon
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W7_GEMAT
13_1_40cm_scaffold_417_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16988..17797)
DNA (810bp) protein (270aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5V9_GEMAT
ATP-binding region ATPase domain protein
13_1_40cm_scaffold_417_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(17812..19422)
DNA (1611bp) protein (537aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W0_GEMAT
sigma-54 factor interaction domain-containing protein
Sigma-54 factor interaction domain-containing protein {ECO:0000313|EMBL:AHG90036.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_417_19
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

19725..22157
DNA (2433bp) protein (811aa)
Putative exopolysaccharide biosynthesis protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W1_GEMAT
putative exopolysaccharide biosynthesis protein
Putative exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:BAH37621.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimon
13_1_40cm_scaffold_417_20
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22154..23119)
DNA (966bp) protein (322aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J660_ANAD2
response regulator receiver modulated diguanylate cyclase Tax=RBG_16_Anaeromyxobacter_69_14_curated
hypothetical protein
13_1_40cm_scaffold_417_21
unknown

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23522..23656
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_scaffold_417_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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23660..25486
DNA (1827bp) protein (609aa)
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_7
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB63_GEMAT
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
13_1_40cm_scaffold_417_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

25491..26126
DNA (636bp) protein (212aa)
Periplasmic polysaccharide biosynthesis/export protein n=1 Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74C33_GEOSL
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
polysaccharide export protein
13_1_40cm_scaffold_417_24
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

26131..27297
DNA (1167bp) protein (389aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14] Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Schlesneria paludicola RepID=UPI00029B1174
13_1_40cm_scaffold_417_25
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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27538..28377
DNA (840bp) protein (280aa)
Anti-sigma-factor antagonist id=4927121 bin=GWA2_Ignavibacteria_55_11 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
anti-sigma-factor antagonist
13_1_40cm_scaffold_417_26
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

28409..28693
DNA (285bp) protein (95aa)
Antagonist protein RsbS id=4337252 bin=GWC2_Ignavibacteria_56_12 species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
anti-anti-sigma regulatory factor
13_1_40cm_scaffold_417_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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28797..29096
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Y9K6_9BACT
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:KCZ71458.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae;
anti-sigma regulatory factor, serine/threonine protein kinase
13_1_40cm_scaffold_417_28
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

29133..29657
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003683974
protein serine/threonine phosphatase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
protein serine/threonine phosphatase
13_1_40cm_scaffold_417_29
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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29654..30412
DNA (759bp) protein (253aa)
LUXO_VIBHA Repressor protein luxO n=1 Tax=Erythrobacter sp. NAP1 RepID=A3W9Z3_9SPHN
LUXO_VIBHA Repressor protein luxO {ECO:0000313|EMBL:EAQ29596.1}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Ery
chemotaxis protein CheY
Displaying 29 items

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