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13_1_40cm_scaffold_4526

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_4526_1
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

2..307
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG41_CHLTF
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_40cm_scaffold_4526_2
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(344..2251)
DNA (1908bp) protein (636aa)
Diguanylate cyclase with GAF sensor n=1 Tax=Thermincola potens (strain JR) RepID=D5XCW1_THEPJ
GAF sensor-containing diguanylate cyclase Tax=RifOxyA12_full_Proteobacteria_58_15_curated
GAF sensor-containing diguanylate cyclase
13_1_40cm_scaffold_4526_3
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

2735..3607
DNA (873bp) protein (291aa)
Putative esterase of the alpha-beta hydrolase superfamily n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEV8_CHLTF
putative alpha-beta hydrolase superfamily esterase
Putative esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:AEP12491.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chlo
13_1_40cm_scaffold_4526_4
CSP1_5_NC10, NC10, Bacteria

Not on your lists

3631..4488
DNA (858bp) protein (286aa)
5'-methylthioadenosine phosphorylase (EC:2.4.2.28) id=14429823 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
5'-methylthioadenosine phosphorylase (EC:2.4.2.28) Tax=CSP1_5_NC10
methylthioadenosine phosphorylase
13_1_40cm_scaffold_4526_5
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4492..5412
DNA (921bp) protein (307aa)
Adenosine kinase n=2 Tax=Geobacter sulfurreducens RepID=D7AHP6_GEOSK
Sugar kinase {ECO:0000313|EMBL:KIE42831.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
adenosine kinase
13_1_40cm_scaffold_4526_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

5409..6134
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RZD9_THEPD
hypothetical protein Tax=RBG_16_Acidobacteria_70_10_curated
hypothetical protein
13_1_40cm_scaffold_4526_7
RBG_13_Deltaproteobacteria_60_28_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6213..6683
DNA (471bp) protein (157aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=RBG_13_Deltaproteobacteria_60_28_curated
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KFN3_9FIRM
13_1_40cm_scaffold_4526_8
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

6686..7111
DNA (426bp) protein (142aa)
NusB antitermination factor; K03625 N utilization substance protein B Tax=RBG_13_Acidobacteria_68_16_curated
nusB; N utilization substance protein B id=14430267 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
nitrogen utilization protein B
13_1_40cm_scaffold_4526_9
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7270..8685
DNA (1416bp) protein (472aa)
Response regulator, PATAN and FRGAF domain-containing n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EE26_GEOBB
Response regulator MprA {ECO:0000313|EMBL:GAM08194.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1
PATAN/FRGAF domain-containing response regulator
13_1_40cm_scaffold_4526_10
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8678..10750
DNA (2073bp) protein (691aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=398767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae;
CheA signal transduction histidine kinase n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E3M0_GEOLS
chemotaxis protein CheA
13_1_40cm_scaffold_4526_11
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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10731..11126
DNA (396bp) protein (132aa)
Chemotaxis signal transduction protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PQ52_9FIRM
Chemotaxis signal transduction protein {ECO:0000313|EMBL:EKP95047.1}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.
CheW protein
13_1_40cm_scaffold_4526_12
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

11469..12101
DNA (633bp) protein (211aa)
response regulator receiver protein Tax=RBG_13_OP8X_37_8_curated
Response regulator receiver protein id=4044262 bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
13_1_40cm_scaffold_4526_13
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

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12098..12724
DNA (627bp) protein (209aa)
cheB-3; response receiver chemotaxis protein-glutamate methylesterase CheB; K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61] Tax=GWC2_Nitrospirae_57_13_curated
Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon id=4316519 bin=GWC2_Nitrospirae_57_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
cheB40H-1; protein glutamate methylesterase CheB associated with MCPs of class 40H, response receiver domain-containing
13_1_40cm_scaffold_4526_14
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12776..13567
DNA (792bp) protein (264aa)
Putative GAF sensor protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G680_GEOUR
GAF sensor protein Tax=GWC2_Geobacteraceae_58_44_curated
putative GAF sensor protein
13_1_40cm_scaffold_4526_15
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

13573..13956
DNA (384bp) protein (128aa)
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY Tax=RBG_13_OP8X_37_8_curated
Response receiver CheY associated with MCPs of class 40H id=4172852 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
response regulator receiver protein
13_1_40cm_scaffold_4526_16
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13899..15926)
DNA (2028bp) protein (676aa)
asnB2; asparagine synthase (EC:6.3.5.4); K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] Tax=RBG_13_Deltaproteobacteria_65_10_curated
asnB; asparagine synthase (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXV0_RHOCS
13_1_40cm_scaffold_4526_17
unknown

Not on your lists

16228..16497
DNA (270bp) protein (90aa)

This feature has no annotations

13_1_40cm_scaffold_4526_18
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(17043..18167)
DNA (1125bp) protein (375aa)
glycosyl transferase family protein; K13685 UDP-N-acetylglucosamine:undecaprenyl-P N-acetylglucosaminyl 1-P transferase [EC:2.7.8.-] Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
Glycosyl transferase family 4 id=4956294 bin=GWC2_Methylomirabilis_70_16 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glycosyl transferase family protein
13_1_40cm_scaffold_4526_19
RLO_PLX_64_10, Bacteria

Not on your lists

comp(18155..19240)
DNA (1086bp) protein (362aa)
putative uDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC:2.6.1.-) Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
putative uDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC:2.6.1.-)
Putative UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase id=4956296 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_4526_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19237..19902)
DNA (666bp) protein (222aa)
Putative uncharacterized protein id=4956298 bin=GWC2_Methylomirabilis_70_16 species=Kitasatospora setae genus=Kitasatospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_scaffold_4526_21
RLO_PLX_64_10, Bacteria

Not on your lists

comp(19899..20594)
DNA (696bp) protein (232aa)
WbqC-like family protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Putative uncharacterized protein id=4956300 bin=GWC2_Methylomirabilis_70_16 species=Oribacterium sp. ACB7 genus=Oribacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_4526_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(20591..22123)
DNA (1533bp) protein (511aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14627091 bin=bin7_NC10_sister species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_4526_23
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(22120..23304)
DNA (1185bp) protein (395aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
Glycosyl transferase, group 1 id=4546758 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoria acuminata genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_scaffold_4526_24
GWC2_Elusimicrobia_64_44_curated, Elusimicrobia, Bacteria

Not on your lists

comp(23301..24413)
DNA (1113bp) protein (371aa)
Uncharacterized protein id=3435982 bin=GWC2_Elusimicrobia_64_44 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
membrane protein Tax=GWC2_Elusimicrobia_64_44_curated
ADP-heptose--lipopolysaccharide heptosyltransferase
13_1_40cm_scaffold_4526_25
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

comp(24410..25333)
DNA (924bp) protein (308aa)
Glycosyl transferase family 1 id=4185486 bin=GWC2_OP3_44_8 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
group 1 glycosyl transferase Tax=GWF2_WOR_2_43_52_curated
type 12 methyltransferase
13_1_40cm_scaffold_4526_26
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25330..25833)
DNA (504bp) protein (168aa)
Glycosyl transferase, group 1 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AY69_RUBXD
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABG03659.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="
Displaying 26 items

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