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13_1_40cm_scaffold_556

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_556_1
unknown

Not on your lists

comp(1..126)
DNA (126bp) protein (42aa)

This feature has no annotations

13_1_40cm_scaffold_556_trna_1
unknown

Not on your lists

comp(370..441)
DNA (72bp)
transferRNA
13_1_40cm_scaffold_556_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(477..2030)
DNA (1554bp) protein (518aa)
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Extracellular solute-binding protein family 5 id=1884954 bin=GWA2_Methylomirabilis_73_35 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 5 extracellular solute-binding protein
13_1_40cm_scaffold_556_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2073..3548)
DNA (1476bp) protein (492aa)
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase id=1884950 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_556_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3594..4436)
DNA (843bp) protein (281aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4426872 bin=GWC2_Methylomirabilis_70_16 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_556_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4448..6016)
DNA (1569bp) protein (523aa)
ligB; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=GWA2_Rokubacteria_73_35_curated
ATP-dependent DNA ligase (EC:6.5.1.1)
Probable DNA ligase id=1884939 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_556_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6111..7706
DNA (1596bp) protein (532aa)
Metal dependent phosphohydrolase id=1884935 bin=GWA2_Methylomirabilis_73_35 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase Tax=GWA2_Rokubacteria_73_35_curated
metal dependent phosphohydrolase
13_1_40cm_scaffold_556_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7887..8066)
DNA (180bp) protein (60aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=1884930 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_556_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8108..8752)
DNA (645bp) protein (215aa)
lexA; LexA repressor (EC:3.4.21.88)
LexA repressor id=1884925 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LexA repressor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_556_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8856..9320)
DNA (465bp) protein (155aa)
putative twin-arginine translocation protein TatB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sec-independent protein translocase protein TatA id=1884921 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus sp. RS9917 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative twin-arginine translocation protein TatB
13_1_40cm_scaffold_556_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9349..10158)
DNA (810bp) protein (270aa)
phosphotransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Probable phosphotransferase id=1884917 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
haloacid dehalogenase
13_1_40cm_scaffold_556_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10164..10538)
DNA (375bp) protein (125aa)
Glycogen synthase id=1884913 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycogen synthase Tax=GWA2_Rokubacteria_73_35_curated
glycogen synthase
13_1_40cm_scaffold_556_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10535..11269)
DNA (735bp) protein (245aa)
Glycogen synthase id=1884913 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycogen synthase Tax=GWA2_Rokubacteria_73_35_curated
glycogen synthase
13_1_40cm_scaffold_556_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11266..12648)
DNA (1383bp) protein (461aa)
sigma-54 dependent DNA-binding response regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=1884909 bin=GWA2_Methylomirabilis_73_35 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator
13_1_40cm_scaffold_556_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12641..13981)
DNA (1341bp) protein (447aa)
sensor histidine kinase (EC:2.7.3.-)
integral membrane sensor signal transduction histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
Integral membrane sensor signal transduction histidine kinase id=1884757 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_556_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13978..14403)
DNA (426bp) protein (142aa)
membrane-associated protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SNARE associated Golgi protein-like protein id=2913053 bin=GWC2_Methylomirabilis_70_16 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative membrane-associated protein
13_1_40cm_scaffold_556_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14655..15017
DNA (363bp) protein (121aa)
RNP-1 like RNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNP-1 like RNA-binding protein id=1884756 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNP-1 like RNA-binding protein
13_1_40cm_scaffold_556_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15151..16233
DNA (1083bp) protein (361aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=1884755 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_scaffold_556_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16281..16640
DNA (360bp) protein (120aa)
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, ArsR family id=1884754 bin=GWA2_Methylomirabilis_73_35 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ArsR family transcriptional regulator
13_1_40cm_scaffold_556_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16644..17150
DNA (507bp) protein (169aa)
HycG protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML58_9BACT
Ni,Fe-hydrogenase III small subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hycG; hycG protein
13_1_40cm_scaffold_556_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17150..19060
DNA (1911bp) protein (637aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML59_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_556_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19057..20001
DNA (945bp) protein (315aa)
Similar to membrane-bound [NiFe]-hydrogenase-3, subunit D n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML60_9BACT
hycD; membrane-bound [NiFe]-hydrogenase-3, subunit D Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hycD; membrane-bound [NiFe]-hydrogenase-3, subunit D
13_1_40cm_scaffold_556_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19998..20639
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML61_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_556_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20636..22069
DNA (1434bp) protein (478aa)
hyfF; hydrogenase-4 component F (EC:1.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hyfF; hydrogenase-4 component F (EC:1.-.-.-)
Hydrogenase-4 component F n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML62_9BACT
13_1_40cm_scaffold_556_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22071..23657
DNA (1587bp) protein (529aa)
Hydrogenase, large subunit-like protein (HycE-like) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML63_9BACT
hydrogenase, large subunit-like protein (HycE-like) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hydrogenase, large subunit-like protein (HycE-like)
13_1_40cm_scaffold_556_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23707..24294)
DNA (588bp) protein (196aa)
type 11 methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase type 11 id=1884749 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type 11 methyltransferase
13_1_40cm_scaffold_556_26
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(24302..25465)
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B6DABF
hypothetical protein Tax=CG_Arma_02
hypothetical protein
Displaying 27 items

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