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13_1_40cm_scaffold_6115

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_6115_1
unknown

Not on your lists

comp(3..80)
DNA (78bp) protein (26aa)

This feature has no annotations

13_1_40cm_scaffold_6115_2
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(77..754)
DNA (678bp) protein (226aa)
30S ribosomal protein S2 n=4 Tax=Methanobrevibacter RepID=RS2_METS3
rps2P; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_16_Archaea_50_20_curated
rps2P; 30S ribosomal protein S2
13_1_40cm_scaffold_6115_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(767..1045)
DNA (279bp) protein (93aa)
DNA-directed RNA polymerase subunit N n=1 Tax=Acidianus hospitalis (strain W1) RepID=F4B761_ACIHW
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
RNA polymerase subunit N
13_1_40cm_scaffold_6115_4
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(1002..1412)
DNA (411bp) protein (137aa)
30S ribosomal protein S9 n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7I1_METSW
rps9p; ribosomal protein S9P Rps9p; K02996 small subunit ribosomal protein S9 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S9
13_1_40cm_scaffold_6115_5
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists


comp(1409..1867)
DNA (459bp) protein (153aa)
50S ribosomal protein L13 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJ17_PYRSN
50S ribosomal protein L13P
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=342949 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. (strain NA
13_1_40cm_scaffold_6115_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(1864..2499)
DNA (636bp) protein (212aa)
rpoD; DNA-directed RNA polymerase subunit D; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_16_Archaea_50_20_curated
RNA polymerase insert n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BB81_9ARCH
RNA polymerase insert
13_1_40cm_scaffold_6115_7
unknown

Not on your lists

comp(2740..3198)
DNA (459bp) protein (153aa)

This feature has no annotations

13_1_40cm_scaffold_6115_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(3314..4009)
DNA (696bp) protein (232aa)
30S ribosomal protein S4 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJ21_PYRSN
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S4
13_1_40cm_scaffold_6115_9
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(4024..4524)
DNA (501bp) protein (167aa)
30S ribosomal protein S13 n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=RS13_STAMF
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Archaea_50_20_curated
rps13p; 30S ribosomal protein S13
13_1_40cm_scaffold_6115_10
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

5087..5551
DNA (465bp) protein (155aa)
S-adenosylmethionine decarboxylase proenzyme; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] Tax=CG_Micra_05
S-adenosylmethionine decarboxylase proenzyme (AdoMetDC)(SamDC) (EC:4.1.1.50)
S-adenosylmethionine decarboxylase proenzyme (AdoMetDC)(SamDC) n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YF21_DICT6
13_1_40cm_scaffold_6115_11
unknown

Not on your lists

5716..5982
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_scaffold_6115_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

6153..7004
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00035E799E
peptidase M50
Putative peptidase M50 {ECO:0000313|EMBL:AFU58271.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera g
13_1_40cm_scaffold_6115_13
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(7165..7485)
DNA (321bp) protein (107aa)
H/ACA RNA-protein complex component Cbf5p; K11131 H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] Tax=RBG_16_Bathyarchaeota_48_13_curated
Probable tRNA pseudouridine synthase B n=3 Tax=Thermofilum RepID=A1RXE0_THEPD
H/ACA RNA-protein complex component Cbf5p
13_1_40cm_scaffold_6115_14
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(7433..7909)
DNA (477bp) protein (159aa)
truB; tRNA pseudouridine synthase B (EC:5.4.99.12); K11131 H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Probable tRNA pseudouridine synthase B n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=TRUB_METKA
TruB; H/ACA RNA-protein complex component Cbf5p
13_1_40cm_scaffold_6115_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(8270..8566)
DNA (297bp) protein (99aa)
50S ribosomal protein L14e n=1 Tax=Thermosphaera aggregans (strain DSM 11486 / M11TL) RepID=D5U1Z7_THEAM
50S ribosomal protein L14e; K02875 large subunit ribosomal protein L14e Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L14
13_1_40cm_scaffold_6115_16
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(8610..9323)
DNA (714bp) protein (238aa)
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] Tax=RBG_13_Bathyarchaeota_38_9_curated
cmk; cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=KCY_AERPE
13_1_40cm_scaffold_6115_17
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(9436..10020)
DNA (585bp) protein (195aa)
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_scaffold_6115_18
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(10022..10606)
DNA (585bp) protein (195aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] Tax=RBG_16_Archaea_50_20_curated
adkA; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3T9E3_9CREN
13_1_40cm_scaffold_6115_19
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(10621..11832)
DNA (1212bp) protein (404aa)
Protein translocase subunit SecY n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U2G8_9ARCH
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
preprotein translocase subunit SecY
13_1_40cm_scaffold_6115_20
Aeropyrum camini, Aeropyrum, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists


comp(11956..12369)
DNA (414bp) protein (138aa)
50S ribosomal protein L15P n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3TEH7_9CREN
rpl15p; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=1198449 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum.;" source="Aeropyrum camini S
13_1_40cm_scaffold_6115_21
unknown

Not on your lists

comp(12980..13177)
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_scaffold_6115_22
unknown

Not on your lists

13310..13666
DNA (357bp) protein (119aa)

This feature has no annotations

13_1_40cm_scaffold_6115_23
Sulfolobales archaeon AZ1, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

13770..14081
DNA (312bp) protein (104aa)
Uncharacterized protein {ECO:0000313|EMBL:EWG06825.1}; TaxID=1326980 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; unclassified Sulfolobales.;" source="Sulfolobales archaeon AZ1.;"
13_1_40cm_scaffold_6115_24
GWB1_OP11_41_10, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(14187..16556)
DNA (2370bp) protein (790aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA helicase n=1 Tax=Leptolyngbya boryana RepID=UPI00036DFEAE
DnaB helicase {ECO:0000313|EMBL:KKR85082.1}; Flags: Fragment;; TaxID=1618577 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_41_10.;"
13_1_40cm_scaffold_6115_25
unknown

Not on your lists

17085..17501
DNA (417bp) protein (139aa)

This feature has no annotations

13_1_40cm_scaffold_6115_26
Streptomyces sp. PVA 94-07, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17735..19171
DNA (1437bp) protein (479aa)
Transmembrane transporter n=2 Tax=Streptomyces RepID=V4ITA7_9ACTO
Transmembrane transporter {ECO:0000313|EMBL:ESQ03345.1}; TaxID=1223307 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PVA 94-07.;"
Transmembrane transporter
13_1_40cm_scaffold_6115_27
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19187..19720)
DNA (534bp) protein (178aa)
Putative uncharacterized protein n=1 Tax=Mycobacterium thermoresistibile ATCC 19527 RepID=G7CGF6_MYCTH
NIPSNAP family protein {ECO:0000313|EMBL:ETX08470.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
13_1_40cm_scaffold_6115_28
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19771..20094
DNA (324bp) protein (108aa)
CalR8 n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08UB5_STIAD
ArsR family transcriptional regulator
CalR8 {ECO:0000313|EMBL:EAU64072.1}; Transcriptional regulator, ArsR domain protein {ECO:0000313|EMBL:ADO69132.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cy
13_1_40cm_scaffold_6115_29
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20094..20351
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI000349424C
ATPase {ECO:0000313|EMBL:KIL41515.1}; TaxID=1590651 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
ATPase
Displaying 29 items

View Taxonomy