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13_1_40cm_scaffold_8236

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_8236_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

3..578
DNA (576bp) protein (192aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFG7_THET1
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, TIGR02947 family; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_scaffold_8236_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

648..1379
DNA (732bp) protein (244aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
13_1_40cm_scaffold_8236_3
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

1430..2014
DNA (585bp) protein (195aa)
Thiol-disulfide isomerase-like protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
redoxin domain-containing protein id=12555452 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
thiol-disulfide isomerase-like protein
13_1_40cm_scaffold_8236_4
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

2159..2383
DNA (225bp) protein (75aa)
id=12555451 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
id=12555451 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_8236_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2598..3548)
DNA (951bp) protein (317aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
ABC-type antimicrobial peptide transport system
ABC transporter permease id=2862414 bin=GWF1_Xanthomonadales_69_6 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
13_1_40cm_scaffold_8236_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3792..4976)
DNA (1185bp) protein (395aa)
ABC transporter ATP-binding protein n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI000380D9CE
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RBG_16_Acidobacteria_70_10_curated
ABC-type transporter, permease component
13_1_40cm_scaffold_8236_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(4973..5671)
DNA (699bp) protein (233aa)
ABC transporter-like protein Tax=RBG_16_Acidobacteria_70_10_curated
ABC transporter-like protein id=24463453 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC transporter-like protein
13_1_40cm_scaffold_8236_8
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(7182..8015)
DNA (834bp) protein (278aa)
endonuclease/exonuclease/phosphatase; K06896 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
hypothetical protein; K06896 id=12555449 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_8236_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(8467..9120)
DNA (654bp) protein (218aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein id=12555447 bin=CNBR_ACIDO species=Bdellovibrio exovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_8236_10
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

9353..10069
DNA (717bp) protein (239aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
hypothetical protein id=12555433 bin=CNBR_ACIDO species=Zavarzinella formosa genus=Zavarzinella taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_8236_11
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(9990..10490)
DNA (501bp) protein (167aa)
putative alpha/beta-hydrolase fold family hydrolase; K07019 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
Alpha/beta hydrolase; K07019 id=12555432 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative alpha/beta-hydrolase fold family hydrolase
13_1_40cm_scaffold_8236_12
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(10583..10957)
DNA (375bp) protein (125aa)
putative alpha/beta-hydrolase fold family hydrolase; K07019 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Alpha/beta hydrolase; K07019 id=12555432 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
alpha/beta hydrolase
13_1_40cm_scaffold_8236_13
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

11118..11621
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KTC9_HALH1
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
13_1_40cm_scaffold_8236_14
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(11774..13255)
DNA (1482bp) protein (494aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
hypothetical protein id=12555431 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_8236_15
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(13384..13875)
DNA (492bp) protein (164aa)
DinB n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WF6_SOLUE
DinB family protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
DinB family protein
13_1_40cm_scaffold_8236_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(14073..14969)
DNA (897bp) protein (299aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_8236_17
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(15106..15684)
DNA (579bp) protein (193aa)
LemA family protein; K03744 LemA protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
LemA family protein; K03744 LemA protein id=12555429 bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
LemA family protein
13_1_40cm_scaffold_8236_18
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(15743..16447)
DNA (705bp) protein (235aa)
hypothetical protein; K06872 uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
hypothetical protein; K06872 uncharacterized protein id=12555428 bin=CNBR_ACIDO species=Spirochaeta bajacaliforniensis genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_8236_19
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(16603..17316)
DNA (714bp) protein (238aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
cytoplasmic protein id=12555427 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_8236_20
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

17342..18349
DNA (1008bp) protein (336aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein id=12555426 bin=CNBR_ACIDO species=Agarivorans albus genus=Agarivorans taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_8236_21
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(18434..19276)
DNA (843bp) protein (281aa)
ATP dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ATP dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] id=12555425 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_8236_22
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(19279..20007)
DNA (729bp) protein (243aa)
Amino acid/peptide transporter n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02C32_SOLUE
amino acid/peptide transporter; K03305 proton-dependent oligopeptide transporter, POT family Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
amino acid/peptide transporter
Displaying 22 items

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