ggKbase home page

13_1_40cm_scaffold_8278

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_8278_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

1..426
DNA (426bp) protein (142aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB47_GEMAT
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ATP-dependent Clp protease ATP-binding subunit clpX
13_1_40cm_scaffold_8278_2
unknown

Not on your lists

comp(438..1607)
DNA (1170bp) protein (390aa)

This feature has no annotations

13_1_40cm_scaffold_8278_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

1639..2133
DNA (495bp) protein (165aa)
Probable GTP-binding protein EngB n=2 Tax=Syntrophomonas RepID=ENGB_SYNWW
GTP-binding protein; K03978 GTP-binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
GTP-binding protein
13_1_40cm_scaffold_8278_4
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(2164..3144)
DNA (981bp) protein (327aa)
ApbE family lipoprotein id=4940723 bin=GWC2_Ignavibacteria_56_12 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
ApbE family lipoprotein
13_1_40cm_scaffold_8278_5
Flavobacteria bacterium MS024-2A, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3125..3640)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BK09_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEG40897.1}; TaxID=487796 species="Bacteria; Bacteroidetes; Flavobacteriia.;" source="Flavobacteria bacterium (strain MS024-2A).;"
hypothetical protein
13_1_40cm_scaffold_8278_6
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(3637..4110)
DNA (474bp) protein (158aa)
FMN-binding protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I7A5K4_MELRP
FMN-binding protein
FMN-binding protein {ECO:0000313|EMBL:AFN75176.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseu
13_1_40cm_scaffold_8278_7
Mangrovimonas yunxiaonensis, Mangrovimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4112..5233)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLS0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KFB00783.1}; TaxID=1197477 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Mangrovimonas.;" source="Mangrovimonas yunxi
hypothetical protein
13_1_40cm_scaffold_8278_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5339..7363
DNA (2025bp) protein (675aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GBT4_CHLAD
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
multi-sensor hybrid histidine kinase
13_1_40cm_scaffold_8278_9
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(7285..7674)
DNA (390bp) protein (130aa)
Putative methylated DNA-protein cysteine methyltransferase n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GG59_9CYAN
methylated-DNA--protein-cysteine methyltransferase; K07443 methylated-DNA-protein-cysteine methyltransferase related protein Tax=CG_Anaero_02
Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding protein
13_1_40cm_scaffold_8278_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(7746..8204)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB51_GEMAT
NUDIX family hydrolase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
NUDIX hydrolase
13_1_40cm_scaffold_8278_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8226..8588)
DNA (363bp) protein (121aa)
PhoP family transcriptional regulator n=1 Tax=Anaeromusa acidaminophila RepID=UPI000367FD4D
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Tax=GWC2_Gemmatimonadetes_71_10_curated
two component transcriptional regulator, winged helix family
13_1_40cm_scaffold_8278_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8546..10423)
DNA (1878bp) protein (626aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Response regulator receiver protein id=1943209 bin=GWB2_Elusimicrobium_63_22 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
general secretory pathway protein E
13_1_40cm_scaffold_8278_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10547..12529)
DNA (1983bp) protein (661aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A514_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_scaffold_8278_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12556..14055
DNA (1500bp) protein (500aa)
trpE; anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Anthranilate synthase component I n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB52_GEMAT
anthranilate synthase component I
13_1_40cm_scaffold_8278_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

14090..15643
DNA (1554bp) protein (518aa)
cya; adenylate cyclase (EC:4.6.1.1); K01768 adenylate cyclase [EC:4.6.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cya; adenylate cyclase (EC:4.6.1.1)
Adenylate cyclase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB53_GEMAT
13_1_40cm_scaffold_8278_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15625..16197)
DNA (573bp) protein (191aa)
Maf-like protein A176_06846 n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2S0F5_9DELT
Septum formation protein Maf
Maf-like protein J421_3871 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_8278_17
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(16194..16643)
DNA (450bp) protein (150aa)
D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-] Tax=RBG_16_Acidobacteria_68_9_curated
D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-] id=7716909 bin=BACIGN_2 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP
D-tyrosyl-tRNA(Tyr) deacylase
13_1_40cm_scaffold_8278_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(16781..18613)
DNA (1833bp) protein (611aa)
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_7
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB63_GEMAT
13_1_40cm_scaffold_8278_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18598..19980)
DNA (1383bp) protein (461aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10); K01840 phosphomannomutase [EC:5.4.2.8] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Phosphoglucosamine mutase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB64_GEMAT
Phosphoglucosamine mutase, archaeal-related protein
13_1_40cm_scaffold_8278_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19990..20391)
DNA (402bp) protein (134aa)
Putative two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB66_GEMAT
putative two-component response regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative two-component response regulator
13_1_40cm_scaffold_8278_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(20376..20867)
DNA (492bp) protein (164aa)
Putative two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB66_GEMAT
putative two-component response regulator Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
response regulator receiver
Displaying 21 items

View Taxonomy