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13_1_40cm_scaffold_946

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_946_1
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

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2..571
DNA (570bp) protein (190aa)
hypothetical protein Tax=RBG_13_Spirochaetes_68_11_curated
hypothetical protein id=14425339 bin=bin1_lowGC species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
13_1_40cm_scaffold_946_2
unknown

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568..1161
DNA (594bp) protein (198aa)

This feature has no annotations

13_1_40cm_scaffold_946_3
unknown

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1246..1380
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_scaffold_946_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1380..2246
DNA (867bp) protein (289aa)
arylformamidase (EC:3.5.1.9) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
arylformamidase (EC:3.5.1.9)
Arylformamidase n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9SA17_9CYAN
13_1_40cm_scaffold_946_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2266..6597
DNA (4332bp) protein (1444aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=GWA2_Rokubacteria_73_35_curated
DEAD/H associated domain protein id=4895050 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ATP-dependent DNA helicase
13_1_40cm_scaffold_946_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6605..7396
DNA (792bp) protein (264aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-ACP reductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
3-oxoacyl-(Acyl-carrier-protein) reductase id=2521453 bin=GWC2_Methylomirabilis_70_16 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_946_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7564..8475
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MIY5_CORCM
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_scaffold_946_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8472..8813
DNA (342bp) protein (114aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4895051 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Methylocystis taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_946_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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8819..9241
DNA (423bp) protein (141aa)
id=14627948 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4895059 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_946_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9263..9532
DNA (270bp) protein (90aa)
transcriptional regulator, AsnC family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4385649 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
transcriptional regulator, AsnC family
13_1_40cm_scaffold_946_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9534..10475
DNA (942bp) protein (314aa)
Putative 2-hydroxyacid dehydrogenase id=4900340 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein Tax=GWA2_Rokubacteria_73_35_curated
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
13_1_40cm_scaffold_946_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10523..10945
DNA (423bp) protein (141aa)
Pyridoxamine 5'-phosphate oxidase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pyridoxamine 5''-phosphate oxidase id=4696791 bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pyridoxamine 5'-phosphate oxidase
13_1_40cm_scaffold_946_13
Streptomyces filamentosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10992..11639
DNA (648bp) protein (216aa)
Probable phosphatase n=3 Tax=Streptomyces RepID=Q50EC3_STRFL
hydrolase
HAD-superfamily hydrolase subfamily IA {ECO:0000313|EMBL:EWS90107.1}; TaxID=457430 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseospo
13_1_40cm_scaffold_946_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11701..12201
DNA (501bp) protein (167aa)
Transcriptional regulator, MarR family id=2855590 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator, MarR family Tax=GWA2_Rokubacteria_70_23_curated
transcriptional regulator, MarR family
13_1_40cm_scaffold_946_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12260..13288
DNA (1029bp) protein (343aa)
Efflux transporter, RND family, MFP subunit id=4900365 bin=GWA2_Methylomirabilis_73_35 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RND family efflux transporter MFP subunit; K07799 putative multidrug efflux transporter MdtA Tax=GWA2_Rokubacteria_73_35_curated
RND efflux membrane fusion protein
13_1_40cm_scaffold_946_16
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13221..13649)
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W1N6_MAGSA
UPI0003D61277 related cluster Tax=RBG_13_Deltaproteobacteria_65_10_curated
hypothetical protein
13_1_40cm_scaffold_946_17
Komagataeibacter intermedius, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14241..14411)
DNA (171bp) protein (57aa)
Uncharacterized protein {ECO:0000313|EMBL:KIE61768.1}; TaxID=1458464 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeib
13_1_40cm_scaffold_946_18
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14461..15918)
DNA (1458bp) protein (486aa)
Uncharacterized protein {ECO:0000313|EMBL:KFB73351.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
13_1_40cm_scaffold_946_19
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

16472..18988
DNA (2517bp) protein (839aa)
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
Putative Hybrid sensor histidine kinase id=4728900 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PAS/PAC sensor hybrid histidine kinase
13_1_40cm_scaffold_946_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19054..19488
DNA (435bp) protein (145aa)
putative ABC transporter periplasmic binding protein A; K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter substrate binding protein (Dipeptide) id=4626997 bin=GWF2_Methylomirabilis_70_14 species=Agrobacterium vitis genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 5 extracellular solute-binding protein
13_1_40cm_scaffold_946_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19523..20521
DNA (999bp) protein (333aa)
putative ABC transporter periplasmic binding protein A; K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter substrate binding protein (Dipeptide) id=4626997 bin=GWF2_Methylomirabilis_70_14 species=Agrobacterium vitis genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative ABC transporter periplasmic binding protein A
13_1_40cm_scaffold_946_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

20570..21514
DNA (945bp) protein (315aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4Z6_SPHTD
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_946_23
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

21507..22370
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035F7E4A
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_946_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

22388..22846
DNA (459bp) protein (153aa)
hypothetical protein; K09117 hypothetical protein id=14625991 bin=bin7_NC10_sister species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K09117 hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_scaffold_946_25
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(22867..23832)
DNA (966bp) protein (322aa)
esterase; K01432 arylformamidase [EC:3.5.1.9] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D6B735
esterase
13_1_40cm_scaffold_946_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23891..25234)
DNA (1344bp) protein (448aa)
putative amidase protein; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWA2_Rokubacteria_73_35_curated
PUTATIVE AMIDASE PROTEIN id=4323718 bin=GWC2_Methylomirabilis_70_16 species=Mesorhizobium loti genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative amidase protein
13_1_40cm_scaffold_946_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(25247..27004)
DNA (1758bp) protein (586aa)
carbamoyl transferase Tax=GWA2_Rokubacteria_73_35_curated
Carbamoyl transferase id=4334340 bin=GWF2_Methylomirabilis_70_14 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbamoyl transferase
13_1_40cm_scaffold_946_28
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(27124..29418)
DNA (2295bp) protein (765aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=14625568 bin=bin7_NC10_sister species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
inner-membrane translocator
13_1_40cm_scaffold_946_29
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(29415..30290)
DNA (876bp) protein (292aa)
livH-3; branched-chain amino acid ABC transporter permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
livH-3; branched-chain amino acid ABC transporter permease id=14625569 bin=bin7_NC10_sister species=Natrinema versiforme genus=Natrinema taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
13_1_40cm_scaffold_946_30
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(30290..32518)
DNA (2229bp) protein (743aa)
solute binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative uncharacterized protein id=14625570 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=bin7_NC10_sister organism_group=NC10
Displaying 30 items

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