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13_1_40cm_scaffold_1218

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1218_1
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists


comp(3..470)
DNA (468bp) protein (156aa)
30S ribosomal protein S5 n=1 Tax=Desulfurispora thermophila RepID=UPI000371F862
30S ribosomal protein S5 Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
rpsE; 30S ribosomal protein S5
13_1_40cm_scaffold_1218_2
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists


comp(471..824)
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Thermincola potens (strain JR) RepID=D5XA99_THEPJ
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RBG_16_RIF_CHLX_69_14_curated
50S ribosomal protein L18
13_1_40cm_scaffold_1218_3
marine actinobacterium MedAcidi-G1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(821..1333)
DNA (513bp) protein (171aa)
50S ribosomal protein L6 n=1 Tax=Desulfurispora thermophila RepID=UPI00037840C5
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1550399 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G1.;"
50S ribosomal protein L6
13_1_40cm_scaffold_1218_4
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists


comp(1393..1890)
DNA (498bp) protein (166aa)
30S ribosomal protein S8 n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IUA6_9FIRM
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RBG_16_RIF_CHLX_69_14_curated
ribosomal protein S8
13_1_40cm_scaffold_1218_5
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists


comp(1996..2637)
DNA (642bp) protein (214aa)
50S ribosomal protein L5 n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WS58_KYRT2
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RBG_16_Chloroflexi_54_18_curated
50S ribosomal protein L5
13_1_40cm_scaffold_1218_6
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2634..3020)
DNA (387bp) protein (129aa)
50S ribosomal protein L24 n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=RL24_SYNWW
50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000255|HAMAP-Rule:MF_01326}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei
13_1_40cm_scaffold_1218_7
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3023..3391)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Thermincola potens (strain JR) RepID=D5XA93_THEPJ
50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source
13_1_40cm_scaffold_1218_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3391..3684)
DNA (294bp) protein (98aa)
30S ribosomal protein S17 n=1 Tax=Varibaculum cambriense RepID=UPI0003B7A9FC
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="V
rpsQ; 30S ribosomal protein S17
13_1_40cm_scaffold_1218_9
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3684..4028)
DNA (345bp) protein (115aa)
50S ribosomal protein L29 n=1 Tax=Nesterenkonia alba RepID=UPI0003B3E916
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL
rpmC; 50S ribosomal protein L29
13_1_40cm_scaffold_1218_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(4025..4456)
DNA (432bp) protein (144aa)
50S ribosomal protein L16 n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKH5_9BACT
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus M
13_1_40cm_scaffold_1218_11
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists


comp(4456..5427)
DNA (972bp) protein (324aa)
30S ribosomal protein S3 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=RS3_ROSS1
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RBG_16_Chloroflexi_51_9_curated
30S ribosomal protein S3
13_1_40cm_scaffold_1218_12
GWC2_CPR2_39_35, CPR2, Bacteria

Not on your lists


comp(5428..5775)
DNA (348bp) protein (116aa)
50S ribosomal protein L22 id=2394496 bin=GWD1_TM7_39_7 species=Amycolicicoccus subflavus genus=Amycolicicoccus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD1_TM7_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D2_39_7
50S ribosomal protein L22 Tax=GWC2_CPR2_39_35
rplV; 50S ribosomal protein L22
13_1_40cm_scaffold_1218_13
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5788..6072)
DNA (285bp) protein (95aa)
30S ribosomal protein S19 n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LST9_TEPAE
rpsS; ribosomal protein S19 (BS19)
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepi
13_1_40cm_scaffold_1218_14
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists


comp(6077..6919)
DNA (843bp) protein (281aa)
50S ribosomal protein L2 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THE1_9CHLR
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter
50S ribosomal protein L2
13_1_40cm_scaffold_1218_15
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6922..7236)
DNA (315bp) protein (105aa)
50S ribosomal protein L23 n=1 Tax=Eubacterium sp. CAG:786 RepID=R5H6F8_9FIRM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environ
LSU ribosomal protein L23P
13_1_40cm_scaffold_1218_16
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


comp(7233..7994)
DNA (762bp) protein (254aa)
50S ribosomal protein L4 n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZL1_CALAS
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RBG_16_Chloroflexi_56_8_curated
rplD; 50S ribosomal protein L4
13_1_40cm_scaffold_1218_17
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists


comp(7994..8656)
DNA (663bp) protein (221aa)
50S ribosomal protein L3 n=1 Tax=Patulibacter americanus RepID=UPI0003B466B0
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibact
50S ribosomal protein L3
13_1_40cm_scaffold_1218_18
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists


comp(8658..8963)
DNA (306bp) protein (102aa)
30S ribosomal protein S10 n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=RS10_HELMI
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 Tax=RBG_16_RIF_CHLX_70_13_curated
RpsJ; ribosomal protein S10
13_1_40cm_scaffold_1218_19
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8992..10179)
DNA (1188bp) protein (396aa)
Elongation factor Tu n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SHA5_GEOOG
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilale
13_1_40cm_scaffold_1218_20
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10193..12301)
DNA (2109bp) protein (703aa)
Elongation factor G n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=EFG_CARHZ
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobactera
fusA2; elongation factor G
13_1_40cm_scaffold_1218_21
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists


comp(12311..12781)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2K1_SPHTD
30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;"
13_1_40cm_scaffold_1218_22
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists


comp(12781..13074)
DNA (294bp) protein (98aa)
30S ribosomal protein S12 n=1 Tax=Prochlorothrix hollandica RepID=UPI00034726A8
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source=
13_1_40cm_scaffold_1218_23
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13153..13812
DNA (660bp) protein (220aa)
16S rRNA methyltransferase n=1 Tax=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) RepID=B5GW92_STRC2
16S RNA G1207 methylase RsmC {ECO:0000313|EMBL:ETK37896.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA
methyltransferase small
13_1_40cm_scaffold_1218_24
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(13923..14942)
DNA (1020bp) protein (340aa)
Putative oligopeptide ABC transporter ATP-binding protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I1L3_CALAS
putative oligopeptide ABC transporter ATP-binding protein
Putative oligopeptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAL99150.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="
13_1_40cm_scaffold_1218_25
bacterium YEK0313, Bacteria

Not on your lists

comp(14942..15511)
DNA (570bp) protein (190aa)
oligopeptide/dipeptide ABC transporter, ATPase subunit (EC:3.6.3.24)
Glutathione import ATP-binding protein GsiA {ECO:0000313|EMBL:CEJ14964.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Putative ABC transporter id=4177826 bin=GWC2_Methylomirabilis_70_16 species=uncultured marine microorganism HF4000_010I05 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_1218_26
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(15471..15929)
DNA (459bp) protein (153aa)
Oligopeptide ABC transporter, ATP-binding protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0D6_THERP
oligopeptide ABC transporter ATP-binding protein
Oligopeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ACM06035.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomi
13_1_40cm_scaffold_1218_27
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(15939..16847)
DNA (909bp) protein (303aa)
PepT transporter family, permease n=1 Tax=Dehalococcoides mccartyi BTF08 RepID=M1REN4_9CHLR
PepT transporter family, permease
PepT transporter family, permease {ECO:0000313|EMBL:AGG08090.1}; TaxID=1193806 species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalo
13_1_40cm_scaffold_1218_28
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(16847..17758)
DNA (912bp) protein (304aa)
Oligopeptide transport system permease protein n=1 Tax=Dehalococcoides mccartyi GY50 RepID=V5QDU5_9CHLR
PepT transporter family, permease Tax=RBG_16_Chloroflexi_51_9_curated
oligopeptide transport system permease protein
13_1_40cm_scaffold_1218_29
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(17876..19552)
DNA (1677bp) protein (559aa)
Oligopeptide transport system substrate-binding protein n=1 Tax=Dehalococcoides mccartyi GY50 RepID=V5QCU0_9CHLR
oligopeptide ABC transporter periplasmic protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RBG_16_Chloroflexi_51_9_curated
oligopeptide ABC transporter periplasmic protein
13_1_40cm_scaffold_1218_30
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(19733..21472)
DNA (1740bp) protein (580aa)
Extracellular solute-binding protein family 5 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G386_CHLAD
family 5 extracellular solute-binding protein
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ACL25259.1}; Flags: Precursor;; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexac
Displaying items 1-30 of 31 in total

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