ggKbase home page
Advanced Search
Search Help

13_1_40cm_UNK

In projects: 13_1_40CM_1  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 11.22 Longest contig: 98.32 Kbp Bin length: 539.23 Mbp GC content: 61.96 %
Contigs count: 226196 Features count: 702625 rRNAs count: 39 tRNAs count: 4579

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Displaying items 51-100 of 226196 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_scaffold_180881
Species: GWF2_Verrucomicrobia_62_7_curated (50%)
2 1195 bp 55.65 5.04 112.47
13_1_40cm_scaffold_359738
Species: CG_Arma_02 (50%)
2 1230 bp 74.15 46.32 112.44
13_1_40cm_scaffold_283622
Species: R_Acidobacteria_65_29 (50%)
2 1166 bp 65.09 5.60 112.44
13_1_40cm_scaffold_190794
Species: Rubrivivax benzoatilyticus (50%)
2 1153 bp 64.44 17.85 112.40
13_1_40cm_scaffold_205896
Species: Granulicella mallensis (50%)
2 1092 bp 55.95 3.45 112.36
13_1_40cm_scaffold_189167
Species: Geodermatophilus obscurus (50%)
2 1160 bp 67.76 5.63 112.24
13_1_40cm_scaffold_228081
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1008 bp 67.66 5.48 112.20
13_1_40cm_scaffold_196224
Species: Delftia acidovorans (100%)
2 1131 bp 59.50 5.99 112.20
13_1_40cm_scaffold_245196 3 1498 bp 60.61 7.04 112.15
13_1_40cm_scaffold_221950
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)
2 1030 bp 62.72 4.87 112.14
13_1_40cm_scaffold_157437
Species: Conexibacter woesei (50%)
2 1298 bp 67.41 4.64 112.10
13_1_40cm_scaffold_224664 3 1020 bp 56.18 4.18 112.06
13_1_40cm_scaffold_217577 2 1047 bp 65.43 9.83 112.03
13_1_40cm_scaffold_220128 3 1037 bp 58.73 5.81 111.96
13_1_40cm_scaffold_161078
Species: Geoalkalibacter ferrihydriticus (50%)
2 1281 bp 66.35 9.21 111.94
13_1_40cm_scaffold_221416 3 1032 bp 58.82 5.59 111.92
13_1_40cm_scaffold_192765
Species: R_Acidobacteria_59_13 (50%)
2 1145 bp 58.17 4.82 111.88
13_1_40cm_scaffold_254585
Species: RLO_RIF_CHLX_71_12 (50%)
2 1503 bp 69.99 13.69 111.78
13_1_40cm_scaffold_207133
Species: Ktedonobacter racemifer (50%)
2 1087 bp 65.59 4.39 111.78
13_1_40cm_scaffold_366817
Species: GWB1_Spirochaetes_59_5_curated (50%)
2 1181 bp 65.37 5.95 111.77
13_1_40cm_scaffold_327422
Species: Candidatus Nitrososphaera evergladensis (50%)
2 1326 bp 50.68 13.44 111.77
13_1_40cm_scaffold_132230
Domain: Bacteria (66.67%)
3 1431 bp 55.28 6.67 111.74
13_1_40cm_scaffold_208330
Species: Geminocystis sp. NIES-3709 (50%)
2 1082 bp 46.58 37.12 111.74
13_1_40cm_scaffold_334608
Domain: Bacteria (66.67%)
3 1015 bp 49.85 3.71 111.72
13_1_40cm_scaffold_168785
Phylum: Rokubacteria (66.67%)
3 1246 bp 70.55 5.24 111.72
13_1_40cm_scaffold_158653
Species: Gloeobacter violaceus (50%)
2 1292 bp 59.44 3.69 111.69
13_1_40cm_scaffold_243301
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1421 bp 72.13 22.96 111.68
13_1_40cm_scaffold_185796
Order: Myxococcales (66.67%)
3 1174 bp 64.22 5.13 111.67
13_1_40cm_scaffold_160760
Species: GWC2_Rokubacteria_70_16_curated (50%)
2 1282 bp 70.36 6.27 111.62
13_1_40cm_scaffold_156075
Species: RBG_16_Chloroflexi_64_32_curated (50%)
2 1304 bp 61.81 8.47 111.58
13_1_40cm_scaffold_208608 3 1081 bp 64.29 7.20 111.56
13_1_40cm_scaffold_153808
Species: Pyrinomonas methylaliphatogenes (50%)
2 1315 bp 58.25 14.12 111.56
13_1_40cm_scaffold_197099
Class: Actinobacteria (66.67%)
3 1681 bp 75.97 5.52 111.54
13_1_40cm_scaffold_198444
Species: RLO_Betaproteobacteria_68_20 (50%)
2 1122 bp 66.13 17.67 111.50
13_1_40cm_scaffold_171328
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated (50%)
2 1236 bp 60.11 4.67 111.41
13_1_40cm_scaffold_121205
Domain: Bacteria (75%)
4 1500 bp 61.93 4.85 111.40
13_1_40cm_scaffold_200141 2 1115 bp 54.17 5.63 111.39
13_1_40cm_scaffold_408553
Species: R_Rokubacteria_73_56 (100%)
2 1161 bp 71.15 10.38 111.37
13_1_40cm_scaffold_145884
Phylum: Rokubacteria (80%)
5 1910 bp 71.94 11.96 111.36
13_1_40cm_scaffold_159552 3 1288 bp 63.20 7.60 111.34
13_1_40cm_scaffold_224896
Domain: Bacteria (100%)
3 1019 bp 66.24 6.16 111.29
13_1_40cm_scaffold_227158
Domain: Bacteria (66.67%)
3 1011 bp 56.38 5.46 111.28
13_1_40cm_scaffold_192661 4 1146 bp 66.49 4.16 111.26
13_1_40cm_scaffold_168958
Species: R_Rokubacteria_71_18 (50%)
2 1246 bp 64.69 3.42 111.24
13_1_40cm_scaffold_108531 3 1588 bp 66.06 4.74 111.08
13_1_40cm_scaffold_224541
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)
2 1021 bp 64.94 4.43 111.07
13_1_40cm_scaffold_228965
Species: Formosa agariphila (50%)
2 1005 bp 69.25 3.75 111.04
13_1_40cm_scaffold_159312 3 1289 bp 57.10 6.43 111.02
13_1_40cm_scaffold_208568
Species: Sorangium cellulosum (50%)
2 1081 bp 69.38 9.06 111.01
13_1_40cm_scaffold_265999
Phylum: Rokubacteria (66.67%)
3 1549 bp 65.53 5.02 110.98
Displaying items 51-100 of 226196 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.