ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 11.22 Longest contig: 98.32 Kbp Bin length: 539.23 Mbp GC content: 61.96 %

Contigs count: 226196 Features count: 702625 rRNAs count: 39 tRNAs count: 4579

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 225501-225550 of 226196 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_scaffold_80337 Domain: Bacteria (100%)	3	2772 bp	72.15	8.60	104.44
13_1_40cm_scaffold_123431 Species: RLO_Betaproteobacteria_68_20 (50%)	2	1485 bp	70.57	11.32	104.44
13_1_40cm_scaffold_156208	3	1304 bp	49.39	2.31	104.45
13_1_40cm_scaffold_156707 Species: Gynuella sunshinyii (50%)	2	1301 bp	56.65	3.67	104.46
13_1_40cm_scaffold_143780 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1367 bp	63.20	13.22	104.46
13_1_40cm_scaffold_160749 Species: Conexibacter woesei (50%)	2	2151 bp	71.59	7.82	104.46
13_1_40cm_scaffold_375271 Species: RLO_Gemmatimonadetes_68_9 (100%)	2	1229 bp	67.21	17.77	104.48
13_1_40cm_scaffold_75445	4	2659 bp	70.03	10.48	104.48
13_1_40cm_scaffold_66139 Species: RBG_16_Actinobacteria_68_12_curated (100%)	2	2033 bp	68.03	9.26	104.48
13_1_40cm_scaffold_199700 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1117 bp	69.11	3.15	104.48
13_1_40cm_scaffold_211266 Species: Bradyrhizobium elkanii (50%)	2	1071 bp	68.72	7.73	104.48
13_1_40cm_scaffold_301349 Species: RBG_16_Archaea_50_20_curated (50%)	2	1071 bp	52.94	10.31	104.48
13_1_40cm_scaffold_34804 Phylum: Actinobacteria (50%)	4	2762 bp	61.62	6.54	104.49
13_1_40cm_scaffold_341133 Species: Crocosphaera watsonii (100%)	2	1045 bp	60.48	5.52	104.50
13_1_40cm_scaffold_194498 Species: GWC2_Gemmatimonadetes_71_10_curated (66.67%)	3	1866 bp	72.88	12.51	104.50
13_1_40cm_scaffold_201414 Species: R_OD1_Yanofskybacteria_41_11 (50%)	2	1487 bp	54.07	12.15	104.51
13_1_40cm_scaffold_190639 Species: Halomonas campaniensis (50%)	2	1154 bp	77.21	5.87	104.51
13_1_40cm_scaffold_146599 Species: R_Acidobacteria_61_28 (50%)	2	1352 bp	57.40	3.71	104.51
13_1_40cm_scaffold_146703 Domain: Bacteria (100%)	3	1352 bp	55.70	4.08	104.51
13_1_40cm_scaffold_185824 Species: Candidatus Solibacter usitatus (50%)	2	1174 bp	56.56	6.63	104.51
13_1_40cm_scaffold_73985 Species: RLO_Betaproteobacteria_68_20 (50%)	2	1926 bp	69.94	3.65	104.52
13_1_40cm_scaffold_213700 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1062 bp	64.03	7.56	104.52
13_1_40cm_scaffold_213490 Species: Chthoniobacter flavus (50%)	2	1062 bp	55.08	8.51	104.52
13_1_40cm_scaffold_197025	2	1128 bp	63.83	8.23	104.52
13_1_40cm_scaffold_94685	2	1702 bp	64.28	6.05	104.52
13_1_40cm_scaffold_141504	3	1679 bp	64.62	7.77	104.53
13_1_40cm_scaffold_127652 Phylum: Proteobacteria (100%)	3	1458 bp	73.94	15.67	104.53
13_1_40cm_scaffold_170897	3	1237 bp	54.97	4.67	104.53
13_1_40cm_scaffold_284235 Species: RBG_16_RIF_CHLX_69_14_curated (66.67%)	3	1303 bp	71.07	5.39	104.53
13_1_40cm_scaffold_147872 Species: R_NC10_66_22 (50%)	2	1346 bp	69.32	11.75	104.53
13_1_40cm_scaffold_171597 Species: GWA2_Rhodocyclales_65_20_curated (50%)	2	1234 bp	59.32	5.70	104.54
13_1_40cm_scaffold_125495 Species: BJP_IG2102_BRC1_58_13 (50%)	2	1472 bp	67.32	5.46	104.55
13_1_40cm_scaffold_102584 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	4	2175 bp	66.71	5.89	104.55
13_1_40cm_scaffold_167667 Species: Rhodanobacter denitrificans (50%)	2	1251 bp	68.75	7.42	104.56
13_1_40cm_scaffold_113919 Phylum: Nitrospirae (75%)	4	2172 bp	59.35	4.39	104.56
13_1_40cm_scaffold_204792 Species: Spirochaeta thermophila (50%)	2	1096 bp	65.78	4.81	104.56
13_1_40cm_scaffold_228439	3	1007 bp	54.92	2.74	104.57
13_1_40cm_scaffold_228284 Species: Delftia acidovorans (100%)	2	1007 bp	71.70	5.23	104.57
13_1_40cm_scaffold_158811 Species: marine sediment metagenome (50%)	2	1291 bp	50.50	2.33	104.57
13_1_40cm_scaffold_222740	4	1027 bp	61.83	10.26	104.58
13_1_40cm_scaffold_164571 Species: Oxalobacter formigenes (50%)	2	1265 bp	64.51	5.16	104.59
13_1_40cm_scaffold_134646 Class: Verrucomicrobiae (66.67%)	3	1417 bp	55.05	9.21	104.59
13_1_40cm_scaffold_230236 Species: marine sediment metagenome (50%)	2	1001 bp	69.83	3.76	104.60
13_1_40cm_scaffold_269292 Species: Ktedonobacter racemifer (50%)	4	1523 bp	50.95	4.28	104.60
13_1_40cm_scaffold_170440 Species: Thermodesulfovibrio yellowstonii (50%)	2	1239 bp	54.96	5.47	104.60
13_1_40cm_scaffold_196368	3	1130 bp	34.42	3.33	104.60
13_1_40cm_scaffold_186137 Species: RLO_Gemmatimonadetes_68_9 (100%)	2	1173 bp	70.08	18.40	104.60
13_1_40cm_scaffold_151894 Species: BJP_IG2158_Actinobacteria_57_21 (50%)	2	1325 bp	67.55	4.93	104.60
13_1_40cm_scaffold_222913 Species: Ktedonobacter racemifer (50%)	2	1606 bp	55.54	5.16	104.61
13_1_40cm_scaffold_126471 Species: Persephonella marina (50%)	2	2082 bp	72.48	8.68	104.61

Displaying items 225501-225550 of 226196 in total

13_1_40cm_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40cm_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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