ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 11.22 Longest contig: 98.32 Kbp Bin length: 539.23 Mbp GC content: 61.96 %

Contigs count: 226196 Features count: 702625 rRNAs count: 39 tRNAs count: 4579

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 226101-226150 of 226196 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_scaffold_224541 Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)	2	1021 bp	64.94	4.43	111.07
13_1_40cm_scaffold_108531	3	1588 bp	66.06	4.74	111.08
13_1_40cm_scaffold_168958 Species: R_Rokubacteria_71_18 (50%)	2	1246 bp	64.69	3.42	111.24
13_1_40cm_scaffold_192661	4	1146 bp	66.49	4.16	111.26
13_1_40cm_scaffold_227158 Domain: Bacteria (66.67%)	3	1011 bp	56.38	5.46	111.28
13_1_40cm_scaffold_224896 Domain: Bacteria (100%)	3	1019 bp	66.24	6.16	111.29
13_1_40cm_scaffold_159552	3	1288 bp	63.20	7.60	111.34
13_1_40cm_scaffold_145884 Phylum: Rokubacteria (80%)	5	1910 bp	71.94	11.96	111.36
13_1_40cm_scaffold_408553 Species: R_Rokubacteria_73_56 (100%)	2	1161 bp	71.15	10.38	111.37
13_1_40cm_scaffold_200141	2	1115 bp	54.17	5.63	111.39
13_1_40cm_scaffold_121205 Domain: Bacteria (75%)	4	1500 bp	61.93	4.85	111.40
13_1_40cm_scaffold_171328 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated (50%)	2	1236 bp	60.11	4.67	111.41
13_1_40cm_scaffold_198444 Species: RLO_Betaproteobacteria_68_20 (50%)	2	1122 bp	66.13	17.67	111.50
13_1_40cm_scaffold_197099 Class: Actinobacteria (66.67%)	3	1681 bp	75.97	5.52	111.54
13_1_40cm_scaffold_153808 Species: Pyrinomonas methylaliphatogenes (50%)	2	1315 bp	58.25	14.12	111.56
13_1_40cm_scaffold_208608	3	1081 bp	64.29	7.20	111.56
13_1_40cm_scaffold_156075 Species: RBG_16_Chloroflexi_64_32_curated (50%)	2	1304 bp	61.81	8.47	111.58
13_1_40cm_scaffold_160760 Species: GWC2_Rokubacteria_70_16_curated (50%)	2	1282 bp	70.36	6.27	111.62
13_1_40cm_scaffold_185796 Order: Myxococcales (66.67%)	3	1174 bp	64.22	5.13	111.67
13_1_40cm_scaffold_243301 Species: GWC2_Gemmatimonadetes_71_10_curated (50%)	2	1421 bp	72.13	22.96	111.68
13_1_40cm_scaffold_158653 Species: Gloeobacter violaceus (50%)	2	1292 bp	59.44	3.69	111.69
13_1_40cm_scaffold_168785 Phylum: Rokubacteria (66.67%)	3	1246 bp	70.55	5.24	111.72
13_1_40cm_scaffold_334608 Domain: Bacteria (66.67%)	3	1015 bp	49.85	3.71	111.72
13_1_40cm_scaffold_208330 Species: Geminocystis sp. NIES-3709 (50%)	2	1082 bp	46.58	37.12	111.74
13_1_40cm_scaffold_132230 Domain: Bacteria (66.67%)	3	1431 bp	55.28	6.67	111.74
13_1_40cm_scaffold_327422 Species: Candidatus Nitrososphaera evergladensis (50%)	2	1326 bp	50.68	13.44	111.77
13_1_40cm_scaffold_366817 Species: GWB1_Spirochaetes_59_5_curated (50%)	2	1181 bp	65.37	5.95	111.77
13_1_40cm_scaffold_207133 Species: Ktedonobacter racemifer (50%)	2	1087 bp	65.59	4.39	111.78
13_1_40cm_scaffold_254585 Species: RLO_RIF_CHLX_71_12 (50%)	2	1503 bp	69.99	13.69	111.78
13_1_40cm_scaffold_192765 Species: R_Acidobacteria_59_13 (50%)	2	1145 bp	58.17	4.82	111.88
13_1_40cm_scaffold_221416	3	1032 bp	58.82	5.59	111.92
13_1_40cm_scaffold_161078 Species: Geoalkalibacter ferrihydriticus (50%)	2	1281 bp	66.35	9.21	111.94
13_1_40cm_scaffold_220128	3	1037 bp	58.73	5.81	111.96
13_1_40cm_scaffold_217577	2	1047 bp	65.43	9.83	112.03
13_1_40cm_scaffold_224664	3	1020 bp	56.18	4.18	112.06
13_1_40cm_scaffold_157437 Species: Conexibacter woesei (50%)	2	1298 bp	67.41	4.64	112.10
13_1_40cm_scaffold_221950 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1030 bp	62.72	4.87	112.14
13_1_40cm_scaffold_245196	3	1498 bp	60.61	7.04	112.15
13_1_40cm_scaffold_196224 Species: Delftia acidovorans (100%)	2	1131 bp	59.50	5.99	112.20
13_1_40cm_scaffold_228081 Species: Candidatus Entotheonella sp. TSY1 (50%)	2	1008 bp	67.66	5.48	112.20
13_1_40cm_scaffold_189167 Species: Geodermatophilus obscurus (50%)	2	1160 bp	67.76	5.63	112.24
13_1_40cm_scaffold_205896 Species: Granulicella mallensis (50%)	2	1092 bp	55.95	3.45	112.36
13_1_40cm_scaffold_190794 Species: Rubrivivax benzoatilyticus (50%)	2	1153 bp	64.44	17.85	112.40
13_1_40cm_scaffold_283622 Species: R_Acidobacteria_65_29 (50%)	2	1166 bp	65.09	5.60	112.44
13_1_40cm_scaffold_359738 Species: CG_Arma_02 (50%)	2	1230 bp	74.15	46.32	112.44
13_1_40cm_scaffold_180881 Species: GWF2_Verrucomicrobia_62_7_curated (50%)	2	1195 bp	55.65	5.04	112.47
13_1_40cm_scaffold_219378 Species: Rhodovulum sp. PH10 (50%)	2	1040 bp	64.23	7.48	112.50
13_1_40cm_scaffold_167353 Species: Ktedonobacter racemifer (66.67%)	3	1253 bp	72.63	9.62	112.53
13_1_40cm_scaffold_180229 Species: RBG_13_Acidobacteria_68_16_curated (50%)	2	1197 bp	59.65	6.50	112.53
13_1_40cm_scaffold_271491 Domain: Bacteria (66.67%)	3	1658 bp	58.20	8.78	112.55

Displaying items 226101-226150 of 226196 in total

13_1_40cm_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40cm_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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