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13_1_40cm_scaffold_35620

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_35620_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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2..673
DNA (672bp) protein (224aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=1969365 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_scaffold_35620_trna_1
unknown

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779..851
DNA (73bp)
transferRNA
13_1_40cm_scaffold_35620_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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893..1867
DNA (975bp) protein (325aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Ribose-phosphate pyrophosphokinase id=1969369 bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ribose-phosphate pyrophosphokinase
13_1_40cm_scaffold_35620_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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1878..2540
DNA (663bp) protein (221aa)
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
50S ribosomal protein L25 id=1969371 bin=GWD2_Deltaproteobacteria_55_8 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
50S ribosomal protein L25
13_1_40cm_scaffold_35620_4
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2803..3213
DNA (411bp) protein (137aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29) Tax=RBG_13_Deltaproteobacteria_52_11b_curated
Peptidyl-tRNA hydrolase id=2080654 bin=GWD2_Deltaproteobacteria_55_8 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pth; peptidyl-tRNA hydrolase
13_1_40cm_scaffold_35620_5
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3329..3691
DNA (363bp) protein (121aa)
30S ribosomal protein S6 id=2431815 bin=GWC2_Deltaproteobacteria_55_46 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=GWC2_Deltaproteobacteria_55_46b_curated
30S ribosomal protein S6
13_1_40cm_scaffold_35620_6
R_Nitrospirae_40_19, Nitrospirae, Bacteria

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3675..4028
DNA (354bp) protein (118aa)
Single-stranded DNA-binding protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBE8_9BACT
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein Tax=RIFCSPHIGHO2_02_FULL_Nitrospirae_40_19_curated
ssb; single-stranded DNA-binding protein
13_1_40cm_scaffold_35620_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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4107..4391
DNA (285bp) protein (95aa)
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
30S ribosomal protein S18 id=2080646 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpsR; 30S ribosomal protein S18
13_1_40cm_scaffold_35620_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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4518..4964
DNA (447bp) protein (149aa)
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
50S ribosomal protein L9 id=2080642 bin=GWD2_Deltaproteobacteria_55_8 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplI; 50S ribosomal protein L9
13_1_40cm_scaffold_35620_trna_2
unknown

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5040..5111
DNA (72bp)
transferRNA
Displaying 10 items

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