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13_1_40CM_Deltaproteobacteria_57_7

13_1_40CM_1_Deltaproteobacteria_57_7
In projects: 13_1_40CM_1  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 13_1_40cm_UNK

Properties

Avg. coverage: 6.84 Longest contig: 18.08 Kbp Bin length: 11.58 Mbp GC content: 56.68 %
Contigs count: 6398 Features count: 14500 rRNAs count: 1 tRNAs count: 54

Genome completeness

megabin RP 49 / 55 MC: 37 BSCG 48 / 51 MC: 38 ASCG 14 / 38 MC: 10

Description

Low abundance Deltas about 3 partial genomes

Displaying items 151-200 of 6398 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_scaffold_133520
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (100%)
2 1423 bp 52.00 6.35 100.56
13_1_40cm_scaffold_194277
Species: RLO_PLX_64_10 (100%)
2 1623 bp 51.32 9.59 100.55
13_1_40cm_scaffold_102882
Species: Chroococcales cyanobacterium CENA595 (50%)
2 1632 bp 50.49 4.31 100.55
13_1_40cm_scaffold_126101
Phylum: Acidobacteria (100%)
3 1468 bp 57.90 6.33 100.55
13_1_40cm_scaffold_201443
Species: Sorangium cellulosum (50%)
2 1110 bp 54.59 3.62 100.54
13_1_40cm_scaffold_123187
Species: Candidatus Entotheonella sp. TSY2 (66.67%)
3 1486 bp 59.69 5.41 100.54
13_1_40cm_scaffold_199163
Species: Candidatus Entotheonella sp. TSY1 (100%)
2 1119 bp 55.76 3.36 100.54
13_1_40cm_scaffold_29460
Species: Candidatus Entotheonella sp. TSY2 (75%)
4 2984 bp 48.12 6.81 100.54
13_1_40cm_scaffold_83362
Species: Bdellovibrio bacteriovorus (50%)
2 1815 bp 55.70 7.47 100.50
13_1_40cm_scaffold_77816
Species: Pyrinomonas methylaliphatogenes (50%)
2 1878 bp 57.24 4.28 100.48
13_1_40cm_scaffold_58328
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (66.67%)
3 2159 bp 60.68 7.32 100.46
13_1_40cm_scaffold_153460
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1317 bp 56.04 14.87 100.46
13_1_40cm_scaffold_148117
Species: Candidatus Entotheonella sp. TSY2 (50%)
2 1344 bp 55.88 3.92 100.45
13_1_40cm_scaffold_175228
Species: Pyrinomonas methylaliphatogenes (100%)
2 2088 bp 54.93 4.57 100.43
13_1_40cm_scaffold_155789
Class: Deltaproteobacteria (100%)
3 1951 bp 55.92 5.27 100.41
13_1_40cm_scaffold_170900
Species: R_Acidobacteria_61_28 (66.67%)
3 1237 bp 54.57 3.25 100.40
13_1_40cm_scaffold_228376
Species: GWA2_Rokubacteria_70_23_curated (50%)
2 1007 bp 56.01 5.23 100.40
13_1_40cm_scaffold_86839
Species: R_Acidobacteria_61_28 (66.67%)
3 1778 bp 55.01 4.66 100.39
13_1_40cm_scaffold_63195
Species: R_Acidobacteria_65_29 (100%)
2 2080 bp 57.02 6.40 100.38
13_1_40cm_scaffold_15768
Species: RLO_PLX_64_10 (50%)
4 3939 bp 54.91 5.48 100.38
13_1_40cm_scaffold_80974
Species: GWC1_OP11_46_24 (50%)
2 1841 bp 61.43 10.36 100.38
13_1_40cm_scaffold_212237
Species: Desulfovibrio vulgaris (50%)
2 1067 bp 60.54 3.53 100.37
13_1_40cm_scaffold_143974
Species: Candidatus Entotheonella sp. TSY1 (100%)
2 1366 bp 61.71 5.51 100.37
13_1_40cm_scaffold_205290
Species: Pyrinomonas methylaliphatogenes (50%)
2 1094 bp 53.47 3.67 100.37
13_1_40cm_scaffold_139314
Species: CSP1_8_Deltaproteobacteria (50%)
2 1390 bp 59.42 3.97 100.36
13_1_40cm_scaffold_15855
Species: Cystobacter fuscus (50%)
2 3931 bp 62.12 5.11 100.36
13_1_40cm_scaffold_20832
Phylum: Proteobacteria (66.67%)
3 3489 bp 58.70 4.82 100.34
13_1_40cm_scaffold_88735
Species: RBG_13_Nitrospirae_41_22_curated (50%)
2 1758 bp 59.61 7.85 100.34
13_1_40cm_scaffold_184817
Species: Cystobacter violaceus (50%)
2 1178 bp 56.03 2.34 100.34
13_1_40cm_scaffold_176982
Species: marine sediment metagenome (50%)
2 1211 bp 58.71 8.71 100.33
13_1_40cm_scaffold_59397
Species: RBG_13_Acidobacteria_68_16_curated (50%)
2 2141 bp 52.22 3.63 100.33
13_1_40cm_scaffold_42802
Species: RLO_Deltaproteobacteria_57_22 (100%)
3 2506 bp 51.96 2.90 100.32
13_1_40cm_scaffold_108611
Species: RLO_Deltaproteobacteria_60_16 (50%)
2 1588 bp 52.90 3.32 100.32
13_1_40cm_scaffold_203696
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated (50%)
2 1986 bp 54.53 9.48 100.30
13_1_40cm_scaffold_149021
Species: GWC2_Deltaproteobacteria_42_11_curated (50%)
2 1340 bp 52.69 4.31 100.30
13_1_40cm_scaffold_147780
Species: RBG_19FT_COMBO_Chloroflexi_62_14_curated (50%)
2 1346 bp 62.18 6.71 100.30
13_1_40cm_scaffold_111403
Class: Deltaproteobacteria (66.67%)
3 2384 bp 56.04 4.42 100.29
13_1_40cm_scaffold_219139
Species: Hyalangium minutum (50%)
2 1041 bp 60.90 14.23 100.29
13_1_40cm_scaffold_217573
Species: uncultured Desulfobacterium sp. (50%)
2 1047 bp 57.21 5.03 100.29
13_1_40cm_scaffold_62077
Domain: Bacteria (100%)
3 2097 bp 53.84 6.82 100.29
13_1_40cm_scaffold_216699
Species: Stigmatella aurantiaca (50%)
2 1050 bp 52.19 6.69 100.29
13_1_40cm_scaffold_133384
Species: RBG_16_Nitrospirae_43_11_curated (50%)
2 1424 bp 58.64 5.99 100.28
13_1_40cm_scaffold_210434
Species: RBG_16_Chloroflexi_64_32_curated (50%)
2 1074 bp 62.48 7.24 100.28
13_1_40cm_scaffold_202916
Species: RLO_Rokubacteria_71_22 (50%)
2 1104 bp 58.51 5.46 100.27
13_1_40cm_scaffold_55181
Species: CG_Delta_05 (50%)
2 2217 bp 52.86 4.76 100.27
13_1_40cm_scaffold_196282
Species: Syntrophobacter fumaroxidans (50%)
2 1131 bp 60.65 8.66 100.27
13_1_40cm_scaffold_194868
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1137 bp 57.70 4.86 100.26
13_1_40cm_scaffold_194687
Species: RBG_16_RIF03_38_10_curated (50%)
2 1137 bp 51.54 6.62 100.26
13_1_40cm_scaffold_191032
Species: R_Nitrospinae_39_10 (50%)
2 1152 bp 59.72 6.54 100.26
13_1_40cm_scaffold_186975
Species: Sorangium cellulosum (50%)
2 1170 bp 53.08 10.08 100.26
Displaying items 151-200 of 6398 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.