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13_1_40CM_Deltaproteobacteria_57_7

13_1_40CM_1_Deltaproteobacteria_57_7
In projects: 13_1_40CM_1  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 13_1_40cm_UNK

Properties

Avg. coverage: 6.84 Longest contig: 18.08 Kbp Bin length: 11.58 Mbp GC content: 56.68 %
Contigs count: 6398 Features count: 14500 rRNAs count: 1 tRNAs count: 54

Genome completeness

megabin RP 49 / 55 MC: 37 BSCG 48 / 51 MC: 38 ASCG 14 / 38 MC: 10

Description

Low abundance Deltas about 3 partial genomes

Displaying items 201-250 of 6398 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_scaffold_184652
Species: RBG_13_Deltaproteobacteria_47_9_curated (50%)
2 1179 bp 61.75 3.83 100.25
13_1_40cm_scaffold_110501
Species: Staphylococcus microti (50%)
2 1574 bp 57.62 5.74 100.25
13_1_40cm_scaffold_181822
Species: Myxococcus fulvus (50%)
2 1191 bp 57.35 4.43 100.25
13_1_40cm_scaffold_106051
Species: Vitellibacter vladivostokensis (50%)
2 1607 bp 46.86 5.62 100.25
13_1_40cm_scaffold_173905
Species: delta proteobacterium NaphS2 (50%)
2 1224 bp 57.11 3.90 100.25
13_1_40cm_scaffold_165032
Species: Desulfomonile tiedjei (50%)
2 1263 bp 57.24 7.35 100.24
13_1_40cm_scaffold_41546
Phylum: Proteobacteria (66.67%)
3 2541 bp 58.09 6.72 100.24
13_1_40cm_scaffold_94631
Species: Enhygromyxa salina (50%)
2 1703 bp 55.14 5.01 100.24
13_1_40cm_scaffold_158367
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (50%)
2 1293 bp 58.00 8.54 100.23
13_1_40cm_scaffold_151657
Species: GWD2_Deltaproteobacteria_55_8_curated (50%)
2 1326 bp 54.98 4.92 100.23
13_1_40cm_scaffold_265179
Species: R_Acidobacteria_67_28 (100%)
2 1380 bp 58.84 9.09 100.22
13_1_40cm_scaffold_303140
Species: GWD2_Deltaproteobacteria_55_8_curated (50%)
2 1389 bp 52.27 3.79 100.22
13_1_40cm_scaffold_138017
Species: RBG_16_Desulfobacca_58_9_curated (50%)
2 1398 bp 60.30 7.18 100.22
13_1_40cm_scaffold_76396
Domain: Bacteria (100%)
3 1895 bp 61.32 5.83 100.21
13_1_40cm_scaffold_133275
Species: RBG_16_RIF03_38_10_curated (100%)
2 1425 bp 53.82 3.17 100.21
13_1_40cm_scaffold_46806
Species: R_Deltaproteobacteria_40_11 (50%)
4 2404 bp 53.83 8.77 100.21
13_1_40cm_scaffold_123434
Species: Halorhodospira halochloris (50%)
2 1485 bp 62.36 4.73 100.20
13_1_40cm_scaffold_117951
Species: RBG_13_Actinobacteria_63_9_curated (50%)
2 1521 bp 61.54 6.93 100.20
13_1_40cm_scaffold_224376
Species: Candidatus Entotheonella sp. TSY2 (50%)
2 1021 bp 56.32 13.52 100.20
13_1_40cm_scaffold_223618
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1024 bp 60.64 8.33 100.20
13_1_40cm_scaffold_221196
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1033 bp 58.76 10.93 100.19
13_1_40cm_scaffold_220339
Species: RBG_13_Firmicutes_65_8_curated (50%)
2 1036 bp 62.84 6.30 100.19
13_1_40cm_scaffold_208799
Species: Planctopirus limnophila (50%)
2 1081 bp 57.26 6.04 100.18
13_1_40cm_scaffold_101860
Species: GWD2_Deltaproteobacteria_55_8_curated (50%)
2 1641 bp 54.36 4.44 100.18
13_1_40cm_scaffold_204162
Species: Candidatus Entotheonella sp. TSY2 (100%)
2 1099 bp 59.14 7.08 100.18
13_1_40cm_scaffold_100777
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 1650 bp 54.91 5.63 100.18
13_1_40cm_scaffold_201115
Species: bacterium UASB270 (50%)
2 1111 bp 53.92 3.61 100.18
13_1_40cm_scaffold_187344
Species: Halobacteriovorax marinus (50%)
2 1168 bp 54.97 4.08 100.17
13_1_40cm_scaffold_350838
Species: RLO_Nitrospinae_45_22 (100%)
2 1168 bp 55.22 13.32 100.17
13_1_40cm_scaffold_183605
Species: Pyrinomonas methylaliphatogenes (50%)
2 1183 bp 57.82 4.88 100.17
13_1_40cm_scaffold_177347
Species: Geobacter sp. OR-1 (50%)
2 1210 bp 61.98 6.43 100.16
13_1_40cm_scaffold_81753
Species: R_Acidobacteria_61_28 (50%)
2 1833 bp 59.85 6.71 100.16
13_1_40cm_scaffold_173050
Species: RBG_16_Acidobacteria_68_9_curated (100%)
2 1228 bp 61.32 8.38 100.16
13_1_40cm_scaffold_171651
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 1234 bp 55.92 4.88 100.16
13_1_40cm_scaffold_170208
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1240 bp 52.74 10.53 100.16
13_1_40cm_scaffold_303529
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1246 bp 52.65 4.43 100.16
13_1_40cm_scaffold_160844
Species: RBG_16_Deltaproteobacteria_54_11_curated (50%)
2 1282 bp 54.68 6.85 100.16
13_1_40cm_scaffold_155141
Species: Candidatus Entotheonella sp. TSY2 (50%)
2 1309 bp 62.03 4.79 100.15
13_1_40cm_scaffold_265738
Species: Azoarcus sp. KH32C (50%)
2 1318 bp 62.67 9.52 100.15
13_1_40cm_scaffold_151528
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (50%)
2 1327 bp 56.52 3.97 100.15
13_1_40cm_scaffold_183311
Species: Candidatus Entotheonella sp. TSY2 (100%)
2 1992 bp 53.16 5.29 100.15
13_1_40cm_scaffold_148493
Species: GWF2_Lentisphaerae_52_8_curated (50%)
2 1342 bp 58.05 7.67 100.15
13_1_40cm_scaffold_145597
Species: CG_Nitrosp_02 (50%)
2 1357 bp 55.86 4.44 100.15
13_1_40cm_scaffold_141725
Species: RLO_Deltaproteobacteria_60_19 (100%)
2 1378 bp 53.70 4.01 100.15
13_1_40cm_scaffold_63036
Species: Candidatus Entotheonella sp. TSY2 (50%)
2 2082 bp 61.34 5.91 100.14
13_1_40cm_scaffold_134062
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 1420 bp 52.18 3.18 100.14
13_1_40cm_scaffold_133636
Species: RBG_13_Deltaproteobacteria_47_9_curated (50%)
2 1423 bp 57.84 5.64 100.14
13_1_40cm_scaffold_129456
Species: Desulfobacca acetoxidans (50%)
2 1447 bp 57.71 4.34 100.14
13_1_40cm_scaffold_129024
Species: Geobacter bemidjiensis (50%)
2 1450 bp 61.03 4.50 100.14
13_1_40cm_scaffold_126025
Species: Bdellovibrio bacteriovorus (50%)
2 1468 bp 60.15 4.79 100.14
Displaying items 201-250 of 6398 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.