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13_1_40CM_Deltaproteobacteria_57_7

13_1_40CM_1_Deltaproteobacteria_57_7
In projects: 13_1_40CM_1  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 13_1_40cm_UNK

Properties

Avg. coverage: 6.84 Longest contig: 18.08 Kbp Bin length: 11.58 Mbp GC content: 56.68 %
Contigs count: 6398 Features count: 14500 rRNAs count: 1 tRNAs count: 54

Genome completeness

megabin RP 49 / 55 MC: 37 BSCG 48 / 51 MC: 38 ASCG 14 / 38 MC: 10

Description

Low abundance Deltas about 3 partial genomes

Displaying items 251-300 of 6398 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_scaffold_116076
Species: Geobacter sp. M18 (50%)
2 1534 bp 59.97 4.25 100.13
13_1_40cm_scaffold_50625
Species: Candidatus Entotheonella sp. TSY2 (50%)
2 2313 bp 57.67 8.57 100.13
13_1_40cm_scaffold_113877
Species: RBG_16_Deltaproteobacteria_58_17_curated (50%)
2 1549 bp 57.84 4.38 100.13
13_1_40cm_scaffold_113913
Species: RHI_Planctomycetes_52_36 (50%)
2 1549 bp 59.78 6.48 100.13
13_1_40cm_scaffold_103552
Species: Geobacter sp. M18 (50%)
2 1627 bp 57.59 3.55 100.12
13_1_40cm_scaffold_43374
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
2 2490 bp 59.36 5.24 100.12
13_1_40cm_scaffold_99126
Species: RBG_16_Acidobacteria_68_9_curated (50%)
2 1663 bp 59.59 7.55 100.12
13_1_40cm_scaffold_96427
Species: GWD2_Deltaproteobacteria_55_8_curated (50%)
2 1687 bp 55.19 5.36 100.12
13_1_40cm_scaffold_40631
Species: R_Nitrospirae_62_14 (100%)
2 2568 bp 62.03 11.24 100.12
13_1_40cm_scaffold_93510
Species: Stigmatella aurantiaca (50%)
2 1714 bp 62.54 10.54 100.12
13_1_40cm_scaffold_92794
Species: Candidatus Entotheonella sp. TSY2 (50%)
2 1720 bp 56.63 5.11 100.12
13_1_40cm_scaffold_92421
Species: RBG_13_Deltaproteobacteria_53_10_curated (50%)
2 1723 bp 59.90 7.14 100.12
13_1_40cm_scaffold_90465
Species: RBG_16_Desulfobacca_60_12_curated (50%)
2 1741 bp 61.92 41.81 100.12
13_1_40cm_scaffold_72919
Species: RBG_16_Elusimicrobia_66_12_curated (50%)
2 1939 bp 58.79 9.19 100.10
13_1_40cm_scaffold_66426
Species: Anaeromyxobacter dehalogenans (50%)
2 2029 bp 57.27 6.68 100.10
13_1_40cm_scaffold_225778
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 1016 bp 54.43 5.68 100.10
13_1_40cm_scaffold_224228
Species: Syntrophus aciditrophicus (50%)
2 1022 bp 47.95 3.68 100.10
13_1_40cm_scaffold_200907
Species: GWC2_Pelobacteraceae_58_13_curated (50%)
2 1112 bp 61.60 3.84 100.09
13_1_40cm_scaffold_196380
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)
2 1130 bp 59.91 7.33 100.09
13_1_40cm_scaffold_192074
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 1148 bp 53.92 5.68 100.09
13_1_40cm_scaffold_188423
Species: delta proteobacterium NaphS2 (50%)
2 1163 bp 61.13 4.53 100.09
13_1_40cm_scaffold_49691
Species: Pelobacter propionicus (50%)
2 2335 bp 56.27 4.62 100.09
13_1_40cm_scaffold_184921
Species: Candidatus Entotheonella sp. TSY1 (100%)
2 1178 bp 50.93 2.77 100.09
13_1_40cm_scaffold_183354
Species: BJP_IG2102_BRC1_58_13 (50%)
2 1184 bp 51.18 7.63 100.08
13_1_40cm_scaffold_48162
Species: Desulfomonile tiedjei (50%)
2 2371 bp 58.58 13.02 100.08
13_1_40cm_scaffold_179862
Species: Tetrasphaera australiensis (50%)
2 1199 bp 51.96 2.93 100.08
13_1_40cm_scaffold_179128
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
2 1202 bp 61.73 8.77 100.08
13_1_40cm_scaffold_178328
Species: GWF2_Lentisphaerae_45_14_curated (50%)
2 1205 bp 61.83 4.79 100.08
13_1_40cm_scaffold_172810
Species: RLO_Rokubacteria_71_22 (50%)
2 1229 bp 59.07 8.78 100.08
13_1_40cm_scaffold_171379
Species: R_Acidobacteria_61_28 (100%)
2 1235 bp 56.44 3.46 100.08
13_1_40cm_scaffold_167945
Species: Anaeromyxobacter dehalogenans (50%)
2 1250 bp 61.20 4.02 100.08
13_1_40cm_scaffold_166562
Species: Desulfomicrobium baculatum (50%)
2 1256 bp 55.25 3.40 100.08
13_1_40cm_scaffold_163184
Species: RLO_Elusimicrobia_59_9 (66.67%)
3 1271 bp 53.50 4.74 100.08
13_1_40cm_scaffold_16112
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)
2 3903 bp 55.55 7.72 100.08
13_1_40cm_scaffold_149477
Species: RBG_16_Acidobacteria_68_9_curated (100%)
2 1337 bp 62.53 6.01 100.08
13_1_40cm_scaffold_145448
Species: RBG_16_Chloroflexi_54_18_curated (50%)
2 1358 bp 58.62 9.80 100.07
13_1_40cm_scaffold_144786
Species: Candidatus Entotheonella sp. TSY1 (100%)
2 1361 bp 58.93 5.53 100.07
13_1_40cm_scaffold_143102
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1370 bp 60.07 5.86 100.07
13_1_40cm_scaffold_140410
Species: Geobacter sulfurreducens (50%)
2 1385 bp 59.93 4.89 100.07
13_1_40cm_scaffold_138100
Species: R_NC10_66_22 (50%)
2 1397 bp 54.19 3.23 100.07
13_1_40cm_scaffold_57118
Species: GWC2_Syntrophus_56_31_curated (50%)
2 2869 bp 54.76 7.00 100.07
13_1_40cm_scaffold_124470
Species: RLO_Deltaproteobacteria_57_22 (100%)
2 1478 bp 55.89 3.91 100.07
13_1_40cm_scaffold_120381
Species: BJP_S1_SUB10_Syntrophobacterales_50_21 (50%)
2 1505 bp 56.48 5.50 100.07
13_1_40cm_scaffold_117147
Species: RBG_13_Planctomycetes_62_9_curated (50%)
2 1526 bp 58.13 9.21 100.07
13_1_40cm_scaffold_222717
Species: Cystobacter fuscus (50%)
2 1586 bp 55.36 3.96 100.06
13_1_40cm_scaffold_103767
Species: Desulfobacca acetoxidans (50%)
2 1625 bp 50.15 4.63 100.06
13_1_40cm_scaffold_19158
Class: Deltaproteobacteria (60%)
5 3616 bp 51.36 4.44 100.06
13_1_40cm_scaffold_75449
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1907 bp 54.22 5.66 100.05
13_1_40cm_scaffold_66343
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated (50%)
2 2030 bp 60.84 7.67 100.05
13_1_40cm_scaffold_62285
Species: R_RIF_OD1_12_48_26 (50%)
2 2093 bp 60.97 3.72 100.05
Displaying items 251-300 of 6398 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.