ggKbase home page

13_1_40cm_scaffold_1893

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1893_1
GWC2_ACD39_50_8_curated, ACD39, Bacteria

Not on your lists

comp(3..1325)
DNA (1323bp) protein (441aa)
hypothetical protein
Putative uncharacterized protein id=4913979 bin=GWC2_ACD39_50_8 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_ACD39_50_8 organism_group=ACD39
hypothetical protein Tax=GWC2_ACD39_50_8_curated
13_1_40cm_scaffold_1893_2
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(1441..1698)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDM6_THET1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ41032.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
13_1_40cm_scaffold_1893_3
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1763..2842)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1G2_SPHTD
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
hypothetical protein
13_1_40cm_scaffold_1893_4

Not on your lists

2884..3924
DNA (1041bp) protein (347aa)
Putative nicotinate phosphoribosyltransferase n=1 Tax=Dehalococcoides mccartyi BTF08 RepID=M1RFC7_9CHLR
Marine sediment metagenome DNA, contig: S06H3_C01841 {ECO:0000313|EMBL:GAI00686.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
putative nicotinate phosphoribosyltransferase
13_1_40cm_scaffold_1893_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

3975..4526
DNA (552bp) protein (184aa)
uracil-DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Uracil-DNA glycosylase superfamily n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THF3_9CHLR
Uracil-DNA glycosylase superfamily
13_1_40cm_scaffold_1893_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

4556..4840
DNA (285bp) protein (95aa)
Uncharacterized protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
13_1_40cm_scaffold_1893_7
Paenibacillus darwinianus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4866..5513
DNA (648bp) protein (216aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1380763 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenib
hypothetical protein n=1 Tax=Paenibacillus massiliensis RepID=UPI000374AB21
RsmE family RNA methyltransferase
13_1_40cm_scaffold_1893_8
unknown

Not on your lists

comp(5524..5868)
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_40cm_scaffold_1893_9
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

5903..7684
DNA (1782bp) protein (594aa)
Elongation factor 4 {ECO:0000255|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000255|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000255|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000255|HAMAP
Elongation factor 4 n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=LEPA_CARHZ
lepA; GTP-binding protein LepA
13_1_40cm_scaffold_1893_10
unknown

Not on your lists

7677..8744
DNA (1068bp) protein (356aa)

This feature has no annotations

13_1_40cm_scaffold_1893_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(8804..9778)
DNA (975bp) protein (325aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIZ7_THET1
NDP-sugar oxidoreductase Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
NAD-dependent epimerase/dehydratase
13_1_40cm_scaffold_1893_12

Not on your lists

9805..10317
DNA (513bp) protein (171aa)
YbaK/prolyl-tRNA synthetase associated region n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7UFN3_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KKL79209.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
YbaK/prolyl-tRNA synthetase associated region
13_1_40cm_scaffold_1893_13
unknown

Not on your lists

10314..10634
DNA (321bp) protein (107aa)

This feature has no annotations

13_1_40cm_scaffold_1893_14
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

10700..11806
DNA (1107bp) protein (369aa)
coproporphyrinogen III oxidase, anaerobic (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Putative coproporphyrinogen dehydrogenase n=1 Tax=Propionibacterium acidifaciens F0233 RepID=U2QBZ6_9ACTO
oxygen-independent coproporphyrinogen III oxidase
13_1_40cm_scaffold_1893_15
unknown

Not on your lists

11849..12199
DNA (351bp) protein (117aa)

This feature has no annotations

13_1_40cm_scaffold_1893_16
RBG_13_Chloroflexi_50_21_curated, Chloroflexi, Bacteria

Not on your lists

12265..13281
DNA (1017bp) protein (339aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZI5_ANATU
hrcA; heat-inducible transcription repressor HrcA; K03705 heat-inducible transcriptional repressor Tax=RBG_13_Chloroflexi_50_21_curated
hrcA; heat-inducible transcription repressor HrcA
13_1_40cm_scaffold_1893_17
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13313..13849
DNA (537bp) protein (179aa)
Protein GrpE n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EFC3_THECK
molecular chaperone GrpE
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=717605 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paeni
13_1_40cm_scaffold_1893_18
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

13856..14974
DNA (1119bp) protein (373aa)
Chaperone protein DnaJ n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2P5_THEOJ
chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family I
13_1_40cm_scaffold_1893_19
unknown

Not on your lists

15372..15593
DNA (222bp) protein (74aa)

This feature has no annotations

Displaying 19 items

View Taxonomy