ggKbase home page

13_1_40cm_scaffold_366

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_366_1
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..489
DNA (489bp) protein (163aa)
alpha/beta hydrolase n=1 Tax=Deinococcus sp. 2009 RepID=UPI0003B40C9F
alpha/beta hydrolase
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:AEQ52027.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagi
13_1_40cm_scaffold_366_2
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(490..2166)
DNA (1677bp) protein (559aa)
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase {ECO:0000256|HAMAP-Rule:MF_01659}; Short=SEPHCHC synthase {ECO:0000256|HAMAP-Rule:MF_01659};; EC=2.2.1.9 {ECO:0000256|HAMAP-Rule
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EJL2_9CHLR
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
13_1_40cm_scaffold_366_3
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

2178..3020
DNA (843bp) protein (281aa)
Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase {ECO:0000256|HAMAP-Rule:MF_01660}; Short=SHCHC synthase {ECO:0000256|HAMAP-Rule:MF_01660};; EC=4.2.99.20 {ECO:0000256|HAMAP-Rule
Alpha/beta hydrolase fold protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C9D2_SPHTD
alpha/beta hydrolase fold protein
13_1_40cm_scaffold_366_4
unknown

Not on your lists

comp(2963..3181)
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_40cm_scaffold_366_5
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3178..4077)
DNA (900bp) protein (300aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};;
menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase (EC:2.5.1.-)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00036517D1
13_1_40cm_scaffold_366_6
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4081..4911)
DNA (831bp) protein (277aa)
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; TaxID=219305 speci
naphthoate synthase (EC:4.1.3.36)
Naphthoate synthase n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RCB5_9ACTO
13_1_40cm_scaffold_366_7
Mesorhizobium sp. LSJC264A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5041..5985)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IDF5_AZOC5
hypothetical protein
4-diphosphocytidyl-2C-methyl-D-erythritol kinase {ECO:0000313|EMBL:ESX24047.1}; TaxID=1287321 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;"
13_1_40cm_scaffold_366_8
GWC1_CPR1_49_13, CPR1, Bacteria

Not on your lists

6106..6882
DNA (777bp) protein (259aa)
Putative AP endonuclease family 2 n=1 Tax=uncultured marine microorganism HF4000_APKG7H23 RepID=B3T9U7_9ZZZZ
Putative AP endonuclease family 2 Tax=GWC1_CPR1_49_13
apurinic endonuclease Apn1
13_1_40cm_scaffold_366_9
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6893..7213
DNA (321bp) protein (107aa)
Uncharacterized protein id=4916055 bin=GWC2_Methylomirabilis_70_16 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Sporulation protein {ECO:0000313|EMBL:EWT03269.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
hypothetical protein
13_1_40cm_scaffold_366_10
unknown

Not on your lists

comp(7210..7422)
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_scaffold_366_11
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

7512..8084
DNA (573bp) protein (191aa)
Putative uncharacterized protein id=3810765 bin=GWC2_Chloroflexi_73_18 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein Tax=GWC2_RIF_CHLX_73_18_curated
hypothetical protein
13_1_40cm_scaffold_366_12
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8081..9046)
DNA (966bp) protein (322aa)
XdhC/CoxI family protein n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BBS9_9RHOB
XdhC/CoxI family protein {ECO:0000313|EMBL:KIC10034.1}; TaxID=1577895 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. AN
hypothetical protein
13_1_40cm_scaffold_366_13
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(9043..10209)
DNA (1167bp) protein (389aa)
VWA containing CoxE family protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MEM6_RHOM4
VWA containing CoxE family protein
VWA containing CoxE family protein {ECO:0000313|EMBL:ACY49254.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodot
13_1_40cm_scaffold_366_14
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10202..11089)
DNA (888bp) protein (296aa)
ATPase associated with various cellular activities, AAA_5 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UV93_ROSS1
ATPase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
ATPase
13_1_40cm_scaffold_366_15
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(11145..11960)
DNA (816bp) protein (272aa)
carbon monoxide dehydrogenase medium subunit (EC:1.2.99.2)
Carbon monoxide dehydrogenase medium subunit {ECO:0000313|EMBL:BAN03646.1}; EC=1.2.99.2 {ECO:0000313|EMBL:BAN03646.1};; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiale
Carbon monoxide dehydrogenase medium subunit n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A5K1_9ACTN
13_1_40cm_scaffold_366_16
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(11957..14311)
DNA (2355bp) protein (785aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G6F4_CHLAD
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding {ECO:0000313|EMBL:ACL23891.1}; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexa
13_1_40cm_scaffold_366_17

Not on your lists

comp(14313..14822)
DNA (510bp) protein (170aa)
[2Fe-2S] binding domain protein id=5010006 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Carbon-monoxide dehydrogenase small subunit {ECO:0000313|EMBL:BAL55816.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
(2Fe-2S)-binding domain-containing protein
13_1_40cm_scaffold_366_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

14926..15528
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Streptomyces sp. FxanaD5 RepID=UPI000370270A
carbon monoxide dehydrogenase subunit G
Carbon monoxide dehydrogenase subunit G {ECO:0000313|EMBL:AHG89699.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_366_19
unknown

Not on your lists

comp(15556..16017)
DNA (462bp) protein (154aa)

This feature has no annotations

13_1_40cm_scaffold_366_20
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

16189..17340
DNA (1152bp) protein (384aa)
amidase (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=14630874 bin=bin9_gal15 species=Pseudonocardia sp. P1 genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
amidase (EC:3.5.1.4)
13_1_40cm_scaffold_366_21
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

17319..18074
DNA (756bp) protein (252aa)
Methyltransferase type 11 n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R274_ISOPI
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADV63504.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (
13_1_40cm_scaffold_366_22
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

18241..19293
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UK41_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:EGK86147.1}; Flags: Precursor;; TaxID=756067 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vagi
protein of unknown function DUF187
13_1_40cm_scaffold_366_23
unknown

Not on your lists

19290..19685
DNA (396bp) protein (132aa)

This feature has no annotations

13_1_40cm_scaffold_366_24
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19750..20421)
DNA (672bp) protein (224aa)
TetR family transcriptional regulatory protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NNC6_GLOVI
TetR family transcriptional regulator {ECO:0000313|EMBL:AII03166.1}; TaxID=37919 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (Nocardia
TetR family transcriptional regulatory protein
13_1_40cm_scaffold_366_25
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20505..21008
DNA (504bp) protein (168aa)
GCN5-related N-acetyltransferase n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SGW0_GEOOG
GCN5-like N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADB74953.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus ob
13_1_40cm_scaffold_366_26
unknown

Not on your lists

21005..21361
DNA (357bp) protein (119aa)

This feature has no annotations

13_1_40cm_scaffold_366_27
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21344..22270)
DNA (927bp) protein (309aa)
HhH-GPD family protein n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W5D0_9ACTO
HhH-GPD family protein
HhH-GPD family protein {ECO:0000313|EMBL:AGZ44217.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.
13_1_40cm_scaffold_366_28
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(22624..22827)
DNA (204bp) protein (68aa)
Cold-shock domain family protein Tax=RBG_16_RIF_CHLX_70_13_curated
Cold-shock domain family protein id=4718003 bin=GWC2_Chloroflexi_73_18 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
cold shock protein
13_1_40cm_scaffold_366_29
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(22946..23800)
DNA (855bp) protein (285aa)
Integral membrane protein id=4290575 bin=GWC2_Chloroflexi_73_18 species=Ruegeria pomeroyi genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein Tax=GWC2_RIF_CHLX_73_18_curated
hypothetical protein
13_1_40cm_scaffold_366_30

Not on your lists

comp(23797..24483)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI0003601E8C
Uncharacterized protein {ECO:0000313|EMBL:KKL77463.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PGAP1 family protein
Displaying items 1-30 of 37 in total

View Taxonomy