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13_1_40cm_scaffold_111

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Displaying items 1-30 of 40 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_111_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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578..2359
DNA (1782bp) protein (594aa)
Type II secretion system protein E n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRV6_KORVE
Type IV-A pilus assembly ATPase PilB {ECO:0000313|EMBL:CDM65588.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;
type II secretion system protein E
13_1_40cm_scaffold_111_2
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

2424..2876
DNA (453bp) protein (151aa)
nitrile hydratase subunit alpha (EC:4.2.1.84); K01721 nitrile hydratase [EC:4.2.1.84] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
nitrile hydratase subunit alpha (EC:4.2.1.84)
Nitrile hydratase subunit alpha n=1 Tax=Pseudomonas putida RepID=NHAA_PSEPU
13_1_40cm_scaffold_111_3
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

2944..3603
DNA (660bp) protein (220aa)
nitrile hydratase (EC:4.2.1.84); K01721 nitrile hydratase [EC:4.2.1.84] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
nthB; nitrile hydratase beta subunit (EC:4.2.1.84)
Cobalt-containing nitrile hydratase subunit beta n=1 Tax=Pantoea sp. AS-PWVM4 RepID=U2L4Z1_9ENTR
13_1_40cm_scaffold_111_4
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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3590..3943
DNA (354bp) protein (118aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
Putative uncharacterized protein id=4793520 bin=GWA2_Methylomirabilis_73_35 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_111_5
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

3933..5198
DNA (1266bp) protein (422aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=4903605 bin=GWC2_Ignavibacteria_56_12 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
peroxiredoxin
13_1_40cm_scaffold_111_6
unknown

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comp(5332..5544)
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_scaffold_111_7
unknown

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comp(5574..6173)
DNA (600bp) protein (200aa)

This feature has no annotations

13_1_40cm_scaffold_111_8

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comp(6367..6894)
DNA (528bp) protein (176aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WV62_9BURK
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AIA10580.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_40cm_scaffold_111_9
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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6935..8797
DNA (1863bp) protein (621aa)
ABC transporter related n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CW5_SOLUE
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABJ81101.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
13_1_40cm_scaffold_111_10
unknown

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8977..9690
DNA (714bp) protein (238aa)

This feature has no annotations

13_1_40cm_scaffold_111_11
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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9746..10300
DNA (555bp) protein (185aa)
Conserved domain protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F8B6_ACIC5
hypothetical protein; K07040 uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
hypothetical protein
13_1_40cm_scaffold_111_12
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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10632..11693
DNA (1062bp) protein (354aa)
Phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; EC=2.3.1.n2 {ECO:0000255|HAMAP-Rule:MF_00019};; Acyl-ACP phosphotransacylase {ECO:0000255|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]
Phosphate acyltransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=PLSX_SOLUE
glycerol-3-phosphate acyltransferase PlsX
13_1_40cm_scaffold_111_13
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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11829..12710
DNA (882bp) protein (294aa)
ACP S-malonyltransferase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CNM2_DESK7
malonyl CoA-ACP transacylase
13_1_40cm_scaffold_111_14
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

12768..13013
DNA (246bp) protein (82aa)
Acyl carrier protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=ACP_KORVE
acpP; acyl carrier protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
acpP; acyl carrier protein
13_1_40cm_scaffold_111_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

13057..14310
DNA (1254bp) protein (418aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029W5_SOLUE
13_1_40cm_scaffold_111_16
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

14465..15802
DNA (1338bp) protein (446aa)
Putative Phosphate-selective porin O and P n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MEI7_9BACT
Phosphate-selective porin O and P Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Phosphate-selective porin O and P
13_1_40cm_scaffold_111_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

15812..17119
DNA (1308bp) protein (436aa)
Spore coat assembly protein-like protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01ZB4_SOLUE
spore coat assembly protein-like protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
spore coat assembly protein-like protein
13_1_40cm_scaffold_111_18
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(17138..18523)
DNA (1386bp) protein (462aa)
amino acid permease; K03294 basic amino acid/polyamine antiporter, APA family Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
amino acid permease; K03294 basic amino acid/polyamine antiporter, APA family id=12555770 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
amino acid permease-associated protein
13_1_40cm_scaffold_111_19
Daphnia pulex, Daphnia, Diplostraca, Phyllopoda, Arthropoda, Metazoa

Not on your lists

comp(18574..19092)
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Daphnia pulex RepID=E9H3T0_DAPPU
Putative uncharacterized protein {ECO:0000313|EMBL:EFX73577.1}; TaxID=6669 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; D
GK13847 gene product from transcript GK13847-RA
13_1_40cm_scaffold_111_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

19222..19668
DNA (447bp) protein (149aa)
photosynthetic reaction centre cytochrome c subunit
beta-lactamase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=12554666 bin=CNBR_ACIDO species=Weeksella virosa genus=Weeksella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_111_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

19780..20724
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003807BD0
beta-lactamase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
beta-lactamase domain-containing protein
13_1_40cm_scaffold_111_22
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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20805..22433
DNA (1629bp) protein (543aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP55314.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
13_1_40cm_scaffold_111_23
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

22649..24469
DNA (1821bp) protein (607aa)
Carbon starvation protein id=4998125 bin=GWA2_Ignavibacteria_55_11 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
carbon starvation protein CstA; K06200 carbon starvation protein Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
carbon starvation protein CstA
13_1_40cm_scaffold_111_24
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

24618..26585
DNA (1968bp) protein (656aa)
arginine decarboxylase (EC:4.1.1.19)
Arginine decarboxylase {ECO:0000256|RuleBase:RU003740, ECO:0000256|SAAS:SAAS00212226}; EC=4.1.1.19 {ECO:0000256|RuleBase:RU003740, ECO:0000256|SAAS:SAAS00212226};; TaxID=762570 species="Bacteria; Bact
Arginine decarboxylase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SHS9_RHOMR
13_1_40cm_scaffold_111_25
RBG_16_RIF03_38_11_curated, RIF3, Bacteria

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26694..27935
DNA (1242bp) protein (414aa)
icd; isocitrate dehydrogenase, nADP-dependent; K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=RBG_16_RIF03_38_11_curated
Isocitrate dehydrogenase [NADP] id=3661145 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
icd; isocitrate dehydrogenase, nADP-dependent
13_1_40cm_scaffold_111_26
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

27936..28862
DNA (927bp) protein (309aa)
malate dehydrogenase (NAD); K00024 malate dehydrogenase [EC:1.1.1.37] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Malate dehydrogenase id=2897307 bin=GWF2_Syntrophobacterales_56_9 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
malate dehydrogenase
13_1_40cm_scaffold_111_27
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(28959..30884)
DNA (1926bp) protein (642aa)
peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PpiC-type peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] id=12555487 bin=CNBR_ACIDO species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PpiC-type peptidyl-prolyl cis-trans isomerase
13_1_40cm_scaffold_111_28
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

31164..32189
DNA (1026bp) protein (342aa)
Rod shape-determining protein MreB n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01ZY4_SOLUE
rod shape-determining protein MreB
Rod shape-determining protein MreB {ECO:0000313|EMBL:ABJ84781.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibac
13_1_40cm_scaffold_111_29
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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32357..33220
DNA (864bp) protein (288aa)
rod shape-determining protein; K03570 rod shape-determining protein MreC Tax=CG_Syntroph_01
Cell shape-determining protein MreC id=4409878 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
rod shape-determining protein MreC
13_1_40cm_scaffold_111_30
unknown

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33217..33351
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying items 1-30 of 40 in total

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