ggKbase home page

13_1_40cm_scaffold_1377

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1377_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(202..1137)
DNA (936bp) protein (312aa)
putative oxidoreductase Tax=GWA2_Rokubacteria_73_35_curated
putative F420-dependent oxidoreductase id=14626112 bin=bin7_NC10_sister species=Actinomadura madurae genus=Actinomadura taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
putative oxidoreductase
13_1_40cm_scaffold_1377_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1211..1798
DNA (588bp) protein (196aa)
TetR family transcriptional regulator; K13770 TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, TetR family id=1890906 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TetR family transcriptional regulator
13_1_40cm_scaffold_1377_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1788..2561
DNA (774bp) protein (258aa)
enoyl-CoA hydratase/carnithine racemase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Enoyl-CoA hydratase/isomerase id=1890904 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase/carnithine racemase
13_1_40cm_scaffold_1377_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2563..3312
DNA (750bp) protein (250aa)
dehydrogenase/reductase 11 (EC:1.1.1.-); K00100 [EC:1.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
dehydrogenase/reductase 11 (EC:1.1.1.-)
Probable oxidoreductase (Short-chain dehydrogenase family) id=3526405 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Natrialba taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_1377_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3389..3712
DNA (324bp) protein (108aa)
sterol-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative sterol carrier protein id=4320175 bin=GWC2_Methylomirabilis_70_24 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
sterol-binding protein
13_1_40cm_scaffold_1377_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

3746..4792
DNA (1047bp) protein (349aa)
poly(R)-hydroxyalkanoic acid synthase subunit PhaC id=14626101 bin=bin7_NC10_sister species=Aneurinibacillus aneurinilyticus genus=Aneurinibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
poly(R)-hydroxyalkanoic acid synthase subunit PhaC Tax=CSP1_6_Rokubacteria
poly(R)-hydroxyalkanoic acid synthase subunit PhaC
13_1_40cm_scaffold_1377_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

4851..5417
DNA (567bp) protein (189aa)
Putative uncharacterized protein id=3479314 bin=GWC2_Methylomirabilis_70_16 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_scaffold_1377_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5414..5980
DNA (567bp) protein (189aa)
Acyl dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Acyl dehydratase id=3479315 bin=GWC2_Methylomirabilis_70_16 species=Caulobacter sp. genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl dehydratase
13_1_40cm_scaffold_1377_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5987..6730)
DNA (744bp) protein (248aa)
3-oxoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
3-oxoacyl-(Acyl-carrier-protein) reductase id=3479316 bin=GWC2_Methylomirabilis_70_16 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
3-oxoacyl-(acyl-carrier-protein) reductase
13_1_40cm_scaffold_1377_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

6834..7325
DNA (492bp) protein (164aa)
Polyhydroxyalkanoate synthesis repressor PhaR id=2278566 bin=GWA2_Elusimicrobia_69_24 species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
polyhydroxyalkanoate synthesis repressor PhaR Tax=GWC2_Rokubacteria_70_16_curated
polyhydroxyalkanoate synthesis repressor PhaR
13_1_40cm_scaffold_1377_11
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(7387..7833)
DNA (447bp) protein (149aa)
id=14626096 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
id=14626096 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_1_40cm_scaffold_1377_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7997..9793
DNA (1797bp) protein (599aa)
long-chain fatty acid CoA ligase (AMP-binding) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AMP-dependent synthetase and ligase id=2278568 bin=GWA2_Elusimicrobia_69_24 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
long-chain fatty-acid-CoA ligase
13_1_40cm_scaffold_1377_13
unknown

Not on your lists

9819..9938
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_scaffold_1377_14
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

9935..10687
DNA (753bp) protein (251aa)
Short-chain dehydrogenase/reductase SDR id=2278571 bin=GWA2_Elusimicrobia_69_24 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
short-chain dehydrogenase/reductase SDR Tax=GWA2_Elusimicrobia_69_24_curated
2-deoxy-D-gluconate 3-dehydrogenase
13_1_40cm_scaffold_1377_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10859..11785
DNA (927bp) protein (309aa)
zinc-containing alcohol dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alcohol dehydrogenase, zinc-containing id=3479510 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
zinc-containing alcohol dehydrogenase
13_1_40cm_scaffold_1377_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11787..12047
DNA (261bp) protein (87aa)
alpha/beta fold family hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alpha/beta hydrolase fold protein id=3479511 bin=GWC2_Methylomirabilis_70_16 species=Nostoc sp. PCC 7107 genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
alpha/beta fold family hydrolase
13_1_40cm_scaffold_1377_17
R_NC10_66_22, NC10, Bacteria

Not on your lists

12044..12292
DNA (249bp) protein (83aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative uncharacterized protein id=4536966 bin=GWF2_Methylomirabilis_70_14 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying 17 items

View Taxonomy