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13_1_40cm_scaffold_22

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Displaying items 1-30 of 84 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_22_1
unknown

Not on your lists

comp(2..76)
DNA (75bp) protein (25aa)

This feature has no annotations

13_1_40cm_scaffold_22_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(97..948)
DNA (852bp) protein (284aa)
ribonuclease/beta lactamase
hypothetical protein id=14627698 bin=bin7_NC10_sister species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_scaffold_22_3
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1135..2778
DNA (1644bp) protein (548aa)
BNR/Asp-box repeat protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G5B8_9BURK
BNR/Asp-box repeat protein {ECO:0000313|EMBL:EDT08643.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gr
BNR/Asp-box repeat-containing protein
Non-viral sialidases; Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases. Cristina Butterfield (8/24/16)
13_1_40cm_scaffold_22_4
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2868..3797)
DNA (930bp) protein (310aa)
putative arylsulfatase (Aryl-sulfate sulphohydrolase) (EC:3.1.6.1)
Putative arylsulfatase (Aryl-sulfate sulphohydrolase) {ECO:0000313|EMBL:CBJ37090.1}; EC=3.1.6.1 {ECO:0000313|EMBL:CBJ37090.1};; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burk
Putative arylsulfatase (Aryl-sulfate sulphohydrolase) n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8N850_RALSL
Pseudoalteromonas carrageenovora arylsulfatase AtsA and related proteins; MBL-fold metallo-hydrolase domain; Arylsulfatase (also known as aryl-sulfate sulfohydrolase, EC 3.1.6.1). Pseudoalteromonas carrageenovora arylsulfatase AtsA may function as a glycosulfohydrolase involved with desulfation of sulfated polysaccharides, which catalyzes hydrolysis of the arylsulfate ester bond, producing the aryl compounds and inorganic sulfate. CD also includes some sequences annotated as ribonucleases. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily. Cristina Butterfield (8/24/16)
13_1_40cm_scaffold_22_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3808..5550)
DNA (1743bp) protein (581aa)
fumarate reductase, or succinate dehydrogenase, flavoprotein subunit (EC:1.3.99.1); K00244 fumarate reductase flavoprotein subunit [EC:1.3.99.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Putative succinate dehydrogenase flavoprotein subunit id=4740802 bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_22_6
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(5547..5822)
DNA (276bp) protein (92aa)
resA; thiol-disulfide oxidoreductase resA Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
putative thiol-disulfide oxidoreductase id=14627055 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Cristina Butterfield (8/24/16)
Maybe SoxW. SoxW is a periplasmic thioredoxin, which takes part in electron transport process Cristina Butterfield (6/2/15)
13_1_40cm_scaffold_22_7
unknown

Not on your lists

comp(5862..6134)
DNA (273bp) protein (91aa)
TRX domain containing but no CXXC motif
Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Cristina Butterfield (8/24/16)
13_1_40cm_scaffold_22_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(6147..7856)
DNA (1710bp) protein (570aa)
SoxB
h16_A3563; 5'-nucleotidase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
h16_A3563; 5'-nucleotidase id=14627057 bin=bin7_NC10_sister species=unknown genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
5'-nucleotidase
13_1_40cm_scaffold_22_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7861..9159)
DNA (1299bp) protein (433aa)
SoxA
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4458008 bin=GWC2_Methylomirabilis_70_24 species=Halorhodospira halophila genus=Halorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_22_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9156..9488)
DNA (333bp) protein (111aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sulfur compound chelating protein SoxZ id=4841180 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_22_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9495..9992)
DNA (498bp) protein (166aa)
sulfur oxidation protein SoxY Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4841179 bin=GWA2_Methylomirabilis_73_35 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sulfur oxidation protein SoxY
13_1_40cm_scaffold_22_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10438..11244)
DNA (807bp) protein (269aa)
TauE/SafE Sulfite exporter
Putative membrane protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A9C0_CARHZ
hypothetical protein; K07090 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_22_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(11308..11892)
DNA (585bp) protein (195aa)
cytochrome c class I Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Cytochrome c id=3662435 bin=GWA2_Methylomirabilis_73_35 species=Phenylobacterium zucineum genus=Phenylobacterium taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c, class I
13_1_40cm_scaffold_22_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(11911..13173)
DNA (1263bp) protein (421aa)
soxF; sulfide dehydrogenase (flavocytochrome), flavoprotein subunit id=14625587 bin=bin7_NC10_sister species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
soxF; sulfide dehydrogenase (flavocytochrome), flavoprotein subunit Tax=CSP1_6_Rokubacteria
soxF; flavocytochrome c sulfide dehydrogenase protein
13_1_40cm_scaffold_22_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13208..14377)
DNA (1170bp) protein (390aa)
innner membrane sulfur transporter
hypothetical protein; K07112 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3662437 bin=GWA2_Methylomirabilis_73_35 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_22_16
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14976..15911
DNA (936bp) protein (312aa)
periplasmic protein
hypothetical protein Tax=RBG_16_Deltaproteobacteria_42_7_curated
hypothetical protein id=3472292 bin=GWA2_Elusimicrobia_56_46 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
13_1_40cm_scaffold_22_17
GWA2_Elusimicrobia_51_34_curated, Elusimicrobia, Bacteria

Not on your lists

16066..16839
DNA (774bp) protein (258aa)
OM beta barrel porin
Putative uncharacterized protein id=4691346 bin=GWC2_Elusimicrobia_51_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
hypothetical protein Tax=GWA2_Elusimicrobia_51_34_curated
hypothetical protein
13_1_40cm_scaffold_22_18
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16844..17653)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00037BB768
aldolase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
class II aldolase
13_1_40cm_scaffold_22_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17653..19731)
DNA (2079bp) protein (693aa)
fusA; elongation factor G Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Elongation factor G id=3662439 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fusA; elongation factor G
13_1_40cm_scaffold_22_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19894..21129)
DNA (1236bp) protein (412aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
thrC; threonine synthase (EC:4.2.3.1)
Elongation factor G id=3662439 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_22_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21258..21965
DNA (708bp) protein (236aa)
Putative uncharacterized protein id=2780637 bin=GWA2_Methylomirabilis_73_35 species=Pleurocapsa minor genus=Pleurocapsa taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_22_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22050..23042)
DNA (993bp) protein (331aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase id=3662441 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_22_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23050..23655)
DNA (606bp) protein (202aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625615 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_22_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23652..24677)
DNA (1026bp) protein (342aa)
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.14) id=14625616 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
theronine dehydrogenase-like Zn-dependent dehydrogenase
13_1_40cm_scaffold_22_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24674..25681)
DNA (1008bp) protein (336aa)
alcohol dehydrogenase (EC:1.1.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
alcohol dehydrogenase (EC:1.1.1.1) id=14625617 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
alcohol dehydrogenase (EC:1.1.1.1)
13_1_40cm_scaffold_22_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25678..26568)
DNA (891bp) protein (297aa)
squalene/phytoene synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
squalene/phytoene synthase id=14625618 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
squalene/phytoene synthase
13_1_40cm_scaffold_22_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26565..27578)
DNA (1014bp) protein (338aa)
hopanoid-associated sugar epimerase; K00091 dihydroflavonol-4-reductase [EC:1.1.1.219] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hopanoid-associated sugar epimerase id=4350132 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hopanoid-associated sugar epimerase
13_1_40cm_scaffold_22_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27770..28444)
DNA (675bp) protein (225aa)
nucleoside phosphorylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2224624 bin=GWA2_Methylomirabilis_73_35 species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nucleoside phosphorylase
13_1_40cm_scaffold_22_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(28441..28773)
DNA (333bp) protein (111aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Radical SAM domain protein id=2224623 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_22_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(28790..29812)
DNA (1023bp) protein (341aa)
radical SAM protein Tax=GWA2_Rokubacteria_73_35_curated
Fe-S protein, radical SAM family id=3818235 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM domain-containing protein
Displaying items 1-30 of 84 in total

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