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13_1_40cm_scaffold_252

Search features with annotation key words

Displaying items 1-30 of 44 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_252_1
unknown

Not on your lists

comp(1..282)
DNA (282bp) protein (94aa)

This feature has no annotations

13_1_40cm_scaffold_252_2
unknown

Not on your lists

comp(319..489)
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_scaffold_252_3
unknown

Not on your lists

comp(486..1265)
DNA (780bp) protein (260aa)

This feature has no annotations

13_1_40cm_scaffold_252_4
unknown

Not on your lists

comp(1843..2154)
DNA (312bp) protein (104aa)

This feature has no annotations

13_1_40cm_scaffold_252_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2194..3168
DNA (975bp) protein (325aa)
NAD-dependent epimerase/dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NAD-dependent epimerase/dehydratase id=4669071 bin=GWF2_Methylomirabilis_70_14 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NAD-dependent epimerase/dehydratase
13_1_40cm_scaffold_252_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3165..3662
DNA (498bp) protein (166aa)
N-acetyltransferase GCN5; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183] Tax=GWA2_Rokubacteria_73_35_curated
Transcriptional regulator, ArsR family id=4213638 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
N-acetyltransferase GCN5
13_1_40cm_scaffold_252_7
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(3703..5247)
DNA (1545bp) protein (515aa)
ABC-type uncharacterized transport system, permease component n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WTE7_9NOST
ABC-type uncharacterized transport system, permease component Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
high-affinity nickel-transporter
13_1_40cm_scaffold_252_8
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(5285..6586)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037E5BE6
hypothetical protein Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
hypothetical protein
13_1_40cm_scaffold_252_9
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6644..8188)
DNA (1545bp) protein (515aa)
hypothetical protein n=1 Tax=Frankia sp. BMG5.12 RepID=UPI0003643F21
Uncharacterized protein {ECO:0000313|EMBL:EFC86391.1}; Flags: Precursor;; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
hypothetical protein
13_1_40cm_scaffold_252_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

8677..9102
DNA (426bp) protein (142aa)
Putative signal-transduction protein with CBS domains id=4374060 bin=GWF2_Methylomirabilis_70_14 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
signal-transduction protein with CBS domains Tax=GWA2_Rokubacteria_70_23_curated
signal-transduction protein with CBS domains
13_1_40cm_scaffold_252_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(9109..10128)
DNA (1020bp) protein (340aa)
alcohol dehydrogenase GroES-like protein id=14627896 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
alcohol dehydrogenase GroES-like protein Tax=CSP1_6_Rokubacteria
alcohol dehydrogenase GroES-like protein
13_1_40cm_scaffold_252_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10313..11569)
DNA (1257bp) protein (419aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4656178 bin=GWF2_Methylomirabilis_70_14 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_252_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11667..12428
DNA (762bp) protein (254aa)
comL; Competence lipoprotein ComL, putative; K05807 putative lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K05807 putative lipoprotein id=14627446 bin=bin7_NC10_sister species=Thalassiobium sp. R2A62 genus=Thalassobium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
tetratricopeptide TPR_2 repeat protein
13_1_40cm_scaffold_252_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12434..13489
DNA (1056bp) protein (352aa)
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] id=14627445 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
threonine aldolase
13_1_40cm_scaffold_252_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13686..14663
DNA (978bp) protein (326aa)
oppD; peptide ABC transporter ATP-binding protein (EC:3.6.3.24); K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein id=14627444 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
oligopeptide ABC transporter ATP-binding protein
13_1_40cm_scaffold_252_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14672..15658
DNA (987bp) protein (329aa)
oppF; oligopeptide ABC transporter ATP-binding protein (EC:3.6.3.27); K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptide ABC transporter ATP-binding protein id=3311237 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
oligopeptide/dipeptide ABC transporter ATPase
13_1_40cm_scaffold_252_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15891..16688
DNA (798bp) protein (266aa)
alpha/beta fold family hydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
esterase/lipase id=14627440 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
putative hydrolase or acyltransferase of alpha/beta superfamily
13_1_40cm_scaffold_252_18
unknown

Not on your lists

comp(16817..16945)
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_40cm_scaffold_252_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17062..18072)
DNA (1011bp) protein (337aa)
peptidase M23B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptidase M23 id=14627438 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptidase M23
13_1_40cm_scaffold_252_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18325..19494
DNA (1170bp) protein (390aa)
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) id=14627617 bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALSr1 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
class I and II aminotransferase
13_1_40cm_scaffold_252_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

19496..20803
DNA (1308bp) protein (436aa)
hom; homoserine dehydrogenase (EC:1.1.1.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hom; homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase id=2513748 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_252_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20916..21974
DNA (1059bp) protein (353aa)
thrC_2; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
L-threonine synthase (EC:4.2.3.1) id=14627619 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
thrC_2; threonine synthase (EC:4.2.3.1)
13_1_40cm_scaffold_252_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

21992..22963
DNA (972bp) protein (324aa)
membrane protein; K07027 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=2513752 bin=GWC2_Methylomirabilis_70_24 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_252_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23039..24268
DNA (1230bp) protein (410aa)
lysC; aspartokinase (EC:2.7.2.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lysC; aspartokinase (EC:2.7.2.4) id=14627626 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lysC; aspartokinase (EC:2.7.2.4)
13_1_40cm_scaffold_252_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

24265..25374
DNA (1110bp) protein (370aa)
alcohol dehydrogenase zinc-binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Alcohol dehydrogenase zinc-binding domain protein id=4231240 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alcohol dehydrogenase zinc-binding domain-containing protein
13_1_40cm_scaffold_252_26
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25394..26182
DNA (789bp) protein (263aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Rhizobium sp. CF080 RepID=J2JR38_9RHIZ
2-hydroxymuconic semialdehyde hydrolase
2-hydroxymuconic semialdehyde hydrolase {ECO:0000313|EMBL:CDN50870.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorh
13_1_40cm_scaffold_252_27
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26179..27324
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI00037C113F
luciferase-like monooxygenase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Luciferase-like, subgroup
13_1_40cm_scaffold_252_28
unknown

Not on your lists

comp(27266..27544)
DNA (279bp) protein (93aa)

This feature has no annotations

13_1_40cm_scaffold_252_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27696..28181
DNA (486bp) protein (162aa)
Helix-hairpin-helix motif (Fragment) id=4231238 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
competence protein ComEA; K02237 competence protein ComEA Tax=GWA2_Rokubacteria_73_35_curated
membrane protein
13_1_40cm_scaffold_252_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

28183..30480
DNA (2298bp) protein (766aa)
ComE-like competence protein id=4231236 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ComE-like competence protein; K02238 competence protein ComEC Tax=GWA2_Rokubacteria_73_35_curated
DNA internalization-related competence protein ComEC/Rec2
Displaying items 1-30 of 44 in total

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