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13_1_40cm_scaffold_52

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Displaying items 1-30 of 47 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_52_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


2..553
DNA (552bp) protein (184aa)
50S ribosomal protein L3 id=1776815 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplC; 50S ribosomal protein L3 Tax=GWA2_Rokubacteria_73_35_curated
rplC; 50S ribosomal protein L3
13_1_40cm_scaffold_52_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


553..1284
DNA (732bp) protein (244aa)
rplD; 50S ribosomal protein L4 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L4 id=1776816 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplD; 50S ribosomal protein L4
13_1_40cm_scaffold_52_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


1281..1574
DNA (294bp) protein (98aa)
50S ribosomal protein L23 id=1776817 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L25/L23; K02892 large subunit ribosomal protein L23 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L25
13_1_40cm_scaffold_52_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


1578..2402
DNA (825bp) protein (275aa)
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L2 id=4799441 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
50S ribosomal protein L2
13_1_40cm_scaffold_52_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


2412..2705
DNA (294bp) protein (98aa)
SSU ribosomal protein S19p (S15e) id=4666293 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=GWA2_Rokubacteria_73_35_curated
rpsS; 30S ribosomal protein S19
13_1_40cm_scaffold_52_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


2710..3252
DNA (543bp) protein (181aa)
ribosomal protein L22, bacterial type Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L22 id=4666294 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosomal protein L22, bacterial type
13_1_40cm_scaffold_52_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


3256..3900
DNA (645bp) protein (215aa)
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=GWA2_Rokubacteria_73_35_curated
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 id=14625519 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsC; 30S ribosomal protein S3
13_1_40cm_scaffold_52_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


3911..4327
DNA (417bp) protein (139aa)
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=GWA2_Rokubacteria_73_35_curated
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 id=14625520 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
rplP; 50S ribosomal protein L16
13_1_40cm_scaffold_52_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


4342..4536
DNA (195bp) protein (65aa)
50S ribosomal protein L29 id=4666297 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L29
13_1_40cm_scaffold_52_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


4547..4795
DNA (249bp) protein (83aa)
30S ribosomal protein S17 id=4666298 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S17
13_1_40cm_scaffold_52_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


4799..5167
DNA (369bp) protein (123aa)
50S ribosomal protein L14 id=4666299 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplN; ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L14
13_1_40cm_scaffold_52_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


5167..5493
DNA (327bp) protein (109aa)
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L24 id=4666300 bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L24
13_1_40cm_scaffold_52_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


5498..6169
DNA (672bp) protein (224aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L5 id=4716770 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplE; 50S ribosomal protein L5
13_1_40cm_scaffold_52_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


6177..6362
DNA (186bp) protein (62aa)
50S ribosomal protein L5 id=4666301 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsZ; 30S ribosomal protein S14 Tax=GWA2_Rokubacteria_73_35_curated
rpsZ; 30S ribosomal protein S14
13_1_40cm_scaffold_52_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


6370..6765
DNA (396bp) protein (132aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 id=14625527 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
30S ribosomal protein S8
13_1_40cm_scaffold_52_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


6776..7324
DNA (549bp) protein (183aa)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L6 id=4666302 bin=GWA2_Methylomirabilis_73_35 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplF; 50S ribosomal protein L6
13_1_40cm_scaffold_52_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


7321..7686
DNA (366bp) protein (122aa)
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L18 id=4716766 bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplR; 50S ribosomal protein L18
13_1_40cm_scaffold_52_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


7806..8342
DNA (537bp) protein (179aa)
30S ribosomal protein S5 id=4666304 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsE; 30S ribosomal protein S5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S5
13_1_40cm_scaffold_52_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


8323..8511
DNA (189bp) protein (63aa)
50S ribosomal protein L30 id=4666305 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=GWA2_Rokubacteria_73_35_curated
LSU ribosomal protein L30P
13_1_40cm_scaffold_52_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


8501..8968
DNA (468bp) protein (156aa)
50S ribosomal protein L15 id=4666306 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=GWA2_Rokubacteria_73_35_curated
rplO; 50S ribosomal protein L15
13_1_40cm_scaffold_52_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


8965..10293
DNA (1329bp) protein (443aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein translocase subunit SecY id=4716762 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
secY; preprotein translocase subunit SecY
13_1_40cm_scaffold_52_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10293..10961
DNA (669bp) protein (223aa)
adenylate kinase family protein (EC:2.7.4.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] id=14625534 bin=bin7_NC10_sister species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate kinase
13_1_40cm_scaffold_52_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10958..11752
DNA (795bp) protein (265aa)
map; methionine aminopeptidase (EC:3.4.11.18) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=14625535 bin=bin7_NC10_sister species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
map; methionine aminopeptidase (EC:3.4.11.18)
13_1_40cm_scaffold_52_24
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11754..11972
DNA (219bp) protein (73aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=14625536 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
infA; translation initiation factor IF-1
13_1_40cm_scaffold_52_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12087..12200
DNA (114bp) protein (38aa)
hypothetical protein; K02919 large subunit ribosomal protein L36 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L36 id=4666311 bin=GWA2_Methylomirabilis_73_35 species=Propionibacterium freudenreichii genus=Propionibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_52_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


12291..12719
DNA (429bp) protein (143aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=14625537 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
30S ribosomal protein S13
13_1_40cm_scaffold_52_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


12723..13133
DNA (411bp) protein (137aa)
30S ribosomal protein S11 id=4666313 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S11
13_1_40cm_scaffold_52_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


13143..13766
DNA (624bp) protein (208aa)
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S4 id=4666314 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsD; 30S ribosomal protein S4
13_1_40cm_scaffold_52_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13777..14760
DNA (984bp) protein (328aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4666368 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_52_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


14757..15233
DNA (477bp) protein (159aa)
50S ribosomal protein L17 id=1724741 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L17
Displaying items 1-30 of 47 in total

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