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13_1_40cm_scaffold_58

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Displaying items 1-30 of 154 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_58_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2..799)
DNA (798bp) protein (266aa)
beta-lactamase domain-containing protein; K06897 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
beta-lactamase domain-containing protein; K06897 id=14431425 bin=bin3_NC10 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
beta-lactamase domain protein
13_1_40cm_scaffold_58_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

814..1512
DNA (699bp) protein (233aa)
hypothetical protein; K09125 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Hypothetical conserved protein id=4453409 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_58_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1515..2042
DNA (528bp) protein (176aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_58_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

2047..3219
DNA (1173bp) protein (391aa)
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] id=14428654 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin3_NC10 organism_group=NC10
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
acyl-CoA dehydrogenase
13_1_40cm_scaffold_58_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

3216..3578
DNA (363bp) protein (121aa)
id=14628004 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_scaffold_58_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3676..4806
DNA (1131bp) protein (377aa)
major facilitator superfamily protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
major facilitator superfamily protein id=14625327 bin=bin7_NC10_sister species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
permease
13_1_40cm_scaffold_58_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4713..5183)
DNA (471bp) protein (157aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative glyoxalase; K07104 id=14625328 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
extradiol ring-cleavage dioxygenase
13_1_40cm_scaffold_58_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5212..6438
DNA (1227bp) protein (409aa)
major facilitator transporter; K08223 MFS transporter, FSR family, fosmidomycin resistance protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fosmidomycin resistance protein; K08223 MFS transporter, FSR family, fosmidomycin resistance protein id=14625329 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator transporter
13_1_40cm_scaffold_58_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6443..7285
DNA (843bp) protein (281aa)
tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36); K07442 tRNA (adenine57-N1/adenine58-N1)-methyltransferase [EC:2.1.1.219 2.1.1.220] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
tRNA (Adenine-N(1)-)-methyltransferase id=4549106 bin=GWA2_Methylomirabilis_73_35 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (adenine-N(1)-)-methyltransferase
13_1_40cm_scaffold_58_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7309..9201
DNA (1893bp) protein (631aa)
peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidylprolyl cis-trans isomerase, putative id=4433399 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_58_11
unknown

Not on your lists

comp(9224..9412)
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_40cm_scaffold_58_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9469..9930
DNA (462bp) protein (154aa)
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcription elongation factor GreA; K03624 transcription elongation factor GreA id=14625338 bin=bin7_NC10_sister species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
greA; transcription elongation factor GreA
13_1_40cm_scaffold_58_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9932..10837
DNA (906bp) protein (302aa)
Putative uncharacterized protein id=4748154 bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
abhydrolase 1 Tax=GWA2_Rokubacteria_70_23_curated
alpha/beta hydrolase fold protein
13_1_40cm_scaffold_58_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10837..12006
DNA (1170bp) protein (390aa)
formyl-CoA transferase (EC:2.8.3.16)
formyl-CoA transferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Acyl-CoA synthase id=4748146 bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_58_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12003..12812)
DNA (810bp) protein (270aa)
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter related id=4748155 bin=GWC2_Methylomirabilis_70_24 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC-type transporter, ATPase subunit
13_1_40cm_scaffold_58_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12805..13596)
DNA (792bp) protein (264aa)
putative inner membrane component of binding-protein-dependent transport system; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Putative inner membrane component of binding-protein-dependent transport system id=4424354 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative ABC transporter (permease protein)
13_1_40cm_scaffold_58_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13604..14605)
DNA (1002bp) protein (334aa)
ABC transporter substrate binding protein id=4748157 bin=GWC2_Methylomirabilis_70_24 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter substrate binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter substrate-binding protein
13_1_40cm_scaffold_58_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14694..15824)
DNA (1131bp) protein (377aa)
Putative uncharacterized protein id=1700397 bin=GWA2_Methylomirabilis_73_35 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_58_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15962..17233)
DNA (1272bp) protein (424aa)
dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase id=3696600 bin=GWC2_Methylomirabilis_70_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative oxidoreductase
13_1_40cm_scaffold_58_20
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17267..17683
DNA (417bp) protein (139aa)
cupin n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B31588
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ88865.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum
13_1_40cm_scaffold_58_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17683..18135
DNA (453bp) protein (151aa)
Acyl dehydratase id=1700405 bin=GWA2_Methylomirabilis_73_35 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative monoamine oxidase regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
MaoC-like protein dehydratase
13_1_40cm_scaffold_58_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18135..19049
DNA (915bp) protein (305aa)
Citryl-CoA lyase (EC:4.1.3.34); K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Citryl-CoA lyase id=3209651 bin=GWC2_Methylomirabilis_70_24 species=Mesorhizobium opportunistum genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
citrate (pro-3S)-lyase
13_1_40cm_scaffold_58_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19207..20211
DNA (1005bp) protein (335aa)
zinc-binding alcohol dehydrogenase family protein; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
alcohol dehydrogenase; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] id=14623416 bin=bin5_DeltaP species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
zinc-binding alcohol dehydrogenase (EC:1.1.1.1)
13_1_40cm_scaffold_58_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20257..21573
DNA (1317bp) protein (439aa)
aminotransferase class-III; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamate-1-semialdehyde 2,1-aminomutase id=3772777 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aminotransferase class-III
13_1_40cm_scaffold_58_25
unknown

Not on your lists

comp(22060..22248)
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_40cm_scaffold_58_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22284..23336
DNA (1053bp) protein (351aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4620050 bin=GWA2_Elusi-like_A8_64_40 species=Deinococcus proteolyticus genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Elusi-like_A8_64_40 organism_group=Elusimicrobia
Peptidase C39 related protein
13_1_40cm_scaffold_58_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23362..24066)
DNA (705bp) protein (235aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3301620 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_58_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24112..24372
DNA (261bp) protein (87aa)
id=14626173 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4527564 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_58_29
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

24393..24644
DNA (252bp) protein (84aa)
HAD-superfamily hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
HAD-superfamily hydrolase; K07025 putative hydrolase of the HAD superfamily id=14626174 bin=bin7_NC10_sister species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_58_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24645..25088)
DNA (444bp) protein (148aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying items 1-30 of 154 in total

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