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13_1_40cm_scaffold_612

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_612_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..323)
DNA (321bp) protein (107aa)
ribonuclease BN; K07058 membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ribonuclease BN
Ribonuclease BN id=5027495 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_612_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

701..1855
DNA (1155bp) protein (385aa)
chromate transporter chromate ion transporter (CHR) family; K07240 chromate transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chromate transporter, chromate ion transporter (CHR) family id=4243642 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
chromate transporter chromate ion transporter (CHR) family
13_1_40cm_scaffold_612_3
unknown

Not on your lists

1965..2282
DNA (318bp) protein (106aa)

This feature has no annotations

13_1_40cm_scaffold_612_4
unknown

Not on your lists

2371..2565
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_scaffold_612_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2749..3330)
DNA (582bp) protein (194aa)
OmpA/MotB domain protein id=4034147 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidoglycan-associated (lipo)protein-like protein; K03640 peptidoglycan-associated lipoprotein Tax=CSP1_6_Rokubacteria
peptidoglycan-binding outer membrane lipoprotein Pal, OmpA family
13_1_40cm_scaffold_612_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3344..3601)
DNA (258bp) protein (86aa)
id=3659327 Tax=GWA2_Rokubacteria_73_35_curated
id=3659327 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_612_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3675..3914)
DNA (240bp) protein (80aa)
Uncharacterized protein conserved in bacteria Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4712283 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_612_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3953..6247
DNA (2295bp) protein (765aa)
transketolase central region; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1] Tax=GWA2_Rokubacteria_73_35_curated
Transketolase central region id=3577277 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transketolase
13_1_40cm_scaffold_612_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6383..7858
DNA (1476bp) protein (492aa)
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycolate oxidase, subunit GlcD id=2732498 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FAD linked oxidase domain-containing protein
13_1_40cm_scaffold_612_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7878..9194
DNA (1317bp) protein (439aa)
FAD linked oxidase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
FAD linked oxidase-like protein id=2732495 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FAD linked oxidase-like protein
13_1_40cm_scaffold_612_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9205..10611
DNA (1407bp) protein (469aa)
hypothetical protein; K11473 glycolate oxidase iron-sulfur subunit Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2732492 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_612_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10608..11129
DNA (522bp) protein (174aa)
moaB; molybdenum cofactor biosynthesis protein B; K03638 molybdenum cofactor biosynthesis protein B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Molybdenum cofactor biosynthesis protein B id=2732488 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
moaB; molybdenum cofactor biosynthesis protein B
13_1_40cm_scaffold_612_13
unknown

Not on your lists

11107..11454
DNA (348bp) protein (116aa)

This feature has no annotations

13_1_40cm_scaffold_612_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11493..12560
DNA (1068bp) protein (356aa)
trypsin-like serine protease; K01362 [EC:3.4.21.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Periplasmic trypsin-like serine protease DegP id=2732483 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
degP; periplasmic trypsin-like serine protease DegP
13_1_40cm_scaffold_612_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12561..12968)
DNA (408bp) protein (136aa)
protein tyrosine phosphatase id=14626823 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
protein tyrosine phosphatase Tax=CSP1_6_Rokubacteria
protein tyrosine phosphatase
13_1_40cm_scaffold_612_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12981..13481)
DNA (501bp) protein (167aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3234529 bin=GWA2_Methylomirabilis_73_35 species=uncultured marine microorganism HF4000_ANIW141A21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_612_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13514..14173)
DNA (660bp) protein (220aa)
cupin
Putative uncharacterized protein id=3870875 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_612_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14269..14553)
DNA (285bp) protein (95aa)
Rhodanese/MoeB/ThiF domain protein id=4327257 bin=GWC2_Methylomirabilis_70_16 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
UBA/THIF-type NAD/FAD binding protein; K11996 adenylyltransferase and sulfurtransferase Tax=GWA2_Rokubacteria_70_23_curated
UBA/THIF-type NAD/FAD binding protein
13_1_40cm_scaffold_612_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14575..15495)
DNA (921bp) protein (307aa)
molybdopterin biosynthesis protein MoeB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Molybdopterin biosynthesis protein MoeB id=3234522 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
moeB1; molybdopterin biosynthesis protein MoeB
13_1_40cm_scaffold_612_20
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

15579..15797
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Aigarchaeota archaeon SCGC AAA471-G05 RepID=UPI0003629926
CHRD domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
13_1_40cm_scaffold_612_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15895..16779
DNA (885bp) protein (295aa)
rmlA; glucose-1-phosphate thymidylyltransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glucose-1-phosphate thymidylyltransferase id=3234520 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rmlA: glucose-1-phosphate thymidylyltransferase
13_1_40cm_scaffold_612_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

16833..17369
DNA (537bp) protein (179aa)
putative dTDP-4-dehydrorhamnose 3,5-epimerase; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative dTDP-4-dehydrorhamnose 3,5-epimerase id=3234518 bin=GWA2_Methylomirabilis_73_35 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative dTDP-4-dehydrorhamnose 3,5-epimerase
13_1_40cm_scaffold_612_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17590..18588
DNA (999bp) protein (333aa)
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=GWA2_Rokubacteria_73_35_curated
dTDP-glucose 4,6-dehydratase id=3234516 bin=GWA2_Methylomirabilis_73_35 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dTDP-glucose 4,6-dehydratase
13_1_40cm_scaffold_612_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

18618..19634
DNA (1017bp) protein (339aa)
PDZ/DHR/GLGF domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PDZ/DHR/GLGF domain protein id=3234512 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PDZ/DHR/GLGF domain-containing protein
13_1_40cm_scaffold_612_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19649..20776
DNA (1128bp) protein (376aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625321 bin=bin7_NC10_sister species=Smithella sp. ME-1 genus=Smithella taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Displaying 25 items

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