ggKbase home page

13_1_40cm_scaffold_77

Search features with annotation key words

Displaying items 1-30 of 50 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_77_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(186..3254)
DNA (3069bp) protein (1023aa)
GAF sensor hybrid histidine kinase (EC:2.7.13.3)
putative two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine kinase id=4849342 bin=GWC2_Methylomirabilis_70_16 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_77_2
unknown

Not on your lists

comp(3761..4078)
DNA (318bp) protein (106aa)

This feature has no annotations

13_1_40cm_scaffold_77_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4643..8698)
DNA (4056bp) protein (1352aa)
GAF sensor hybrid histidine kinase (EC:2.7.13.3) Tax=GWC2_Rokubacteria_70_16_curated
Histidine kinase (EC:2.7.13.3)
GAF sensor hybrid histidine kinase id=2475645 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_77_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8695..9957)
DNA (1263bp) protein (421aa)
major facilitator transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Twin-arginine translocation pathway signal id=2589436 bin=GWA2_Methylomirabilis_73_35 species=Burkholderia thailandensis genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major Facilitator Superfamily protein
13_1_40cm_scaffold_77_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9960..12746)
DNA (2787bp) protein (929aa)
uvrA; excinuclease ABC subunit A; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Excinuclease ABC, subunit A id=4232696 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
uvrA; excinuclease ABC subunit A
13_1_40cm_scaffold_77_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

12801..14162
DNA (1362bp) protein (454aa)
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator id=14626361 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
13_1_40cm_scaffold_77_7
unknown

Not on your lists

14298..14708
DNA (411bp) protein (137aa)

This feature has no annotations

13_1_40cm_scaffold_77_8
unknown

Not on your lists

14705..15022
DNA (318bp) protein (106aa)

This feature has no annotations

13_1_40cm_scaffold_77_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15026..15406
DNA (381bp) protein (127aa)
histidine kinase; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Histidine kinase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NY93_AROAE
histidine kinase
13_1_40cm_scaffold_77_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15499..16008
DNA (510bp) protein (170aa)
FUR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transcriptional regulator, Fur family id=2589439 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ferric-uptake regulator
13_1_40cm_scaffold_77_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

15980..16429
DNA (450bp) protein (150aa)
rbr; rubrerythrin id=14626355 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
rbr; rubrerythrin Tax=CSP1_6_Rokubacteria
rbr; rubrerythrin
13_1_40cm_scaffold_77_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16578..17852
DNA (1275bp) protein (425aa)
glpC; ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
glpC; ferredoxin id=14626356 bin=bin7_NC10_sister species=Sulfobacillus thermosulfidooxidans genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
glpC; ferredoxin
13_1_40cm_scaffold_77_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17849..18430
DNA (582bp) protein (194aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626357 bin=bin7_NC10_sister species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_77_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18427..18759
DNA (333bp) protein (111aa)
lipoprotein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lipoprotein id=14626358 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lipoprotein
13_1_40cm_scaffold_77_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18824..19549)
DNA (726bp) protein (242aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14626359 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_77_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19578..19823)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Entamoeba invadens RepID=S0B5F6_ENTIV
unclassified Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA-directed RNA polymerase subunit delta
13_1_40cm_scaffold_77_trna_1
unknown

Not on your lists

20110..20181
DNA (72bp)
transferRNA
13_1_40cm_scaffold_77_17
Oligella urethralis, Oligella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20261..20476)
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Oligella urethralis RepID=UPI00036AB1C7
General stress protein CsbD {ECO:0000313|EMBL:KGF30985.1}; TaxID=1401065 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Oligella.;" source="Oligella urethralis
CsbD-like protein
13_1_40cm_scaffold_77_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(20518..20703)
DNA (186bp) protein (62aa)
membrane protein n=1 Tax=Thioalkalivibrio RepID=UPI000374E325
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
small integral membrane protein
13_1_40cm_scaffold_77_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20933..21328
DNA (396bp) protein (132aa)
two-component system sensor protein (EC:2.7.3.-) Tax=GWA2_Rokubacteria_73_35_curated
cetoacetate metabolism regulatory protein atoC id=2772883 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
13_1_40cm_scaffold_77_20
unknown

Not on your lists

21749..22003
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_40cm_scaffold_77_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

22000..22791
DNA (792bp) protein (264aa)
enoyl-CoA hydratase (EC:4.2.1.-)
enoyl-CoA hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Enoyl-CoA hydratase/isomerase id=4534449 bin=GWF2_Methylomirabilis_70_14 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_77_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22791..23849
DNA (1059bp) protein (353aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=4681940 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_scaffold_77_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23846..24253
DNA (408bp) protein (136aa)
hypothetical protein; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4534447 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_77_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24258..24659
DNA (402bp) protein (134aa)
hypothetical protein; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=GWA2_Rokubacteria_73_35_curated
6-pyruvoyl tetrahydrobiopterin synthase (EC:4.2.3.12)
6-carboxy-5,6,7,8-tetrahydropterin synthase id=4681942 bin=GWA2_Methylomirabilis_73_35 species=Gracilibacillus halophilus genus=Gracilibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_77_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24656..25237
DNA (582bp) protein (194aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
folE; GTP cyclohydrolase I (EC:3.5.4.16) id=14626369 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
GTP cyclohydrolase (EC:3.5.4.16)
13_1_40cm_scaffold_77_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

25234..25953
DNA (720bp) protein (240aa)
short chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
GTP cyclohydrolase I id=4681943 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_1_40cm_scaffold_77_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

26017..26343
DNA (327bp) protein (109aa)
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) id=4681944 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein)
13_1_40cm_scaffold_77_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26362..27036
DNA (675bp) protein (225aa)
MoaD family protein; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] Tax=GWA2_Rokubacteria_73_35_curated
molybdopterin converting factor subunit 1; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] id=14626372 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
MoaD family protein
13_1_40cm_scaffold_77_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

27039..28439
DNA (1401bp) protein (467aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
tRNA(Ile)-lysidine synthase id=4681946 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA(Ile)-lysidine synthetase
Displaying items 1-30 of 50 in total

View Taxonomy