ggKbase home page

13_1_40cm_scaffold_185

Search features with annotation key words

Displaying items 1-30 of 53 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_185_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(105..839)
DNA (735bp) protein (245aa)
amtB; ammonium transport protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ammonium transport protein (Amt family) id=4828258 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amtB; ammonium transport protein
13_1_40cm_scaffold_185_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(815..1462)
DNA (648bp) protein (216aa)
amtB; ammonium transport protein Tax=GWA2_Rokubacteria_73_35_curated
Ammonium transport protein (Amt family) id=4828258 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amtB; ammonium transport protein
13_1_40cm_scaffold_185_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1473..1655)
DNA (183bp) protein (61aa)
nitrogen regulatory protein PII; K04751 nitrogen regulatory protein P-II 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nitrogen regulatory protein P-II 1 id=1767171 bin=GWA2_Methylomirabilis_73_35 species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrogen regulatory protein PII
13_1_40cm_scaffold_185_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2012..3316)
DNA (1305bp) protein (435aa)
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=GWA2_Rokubacteria_73_35_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=1767173 bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component, sigma54 specific, transcriptional regulator, Fis family
13_1_40cm_scaffold_185_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3313..4809)
DNA (1497bp) protein (499aa)
signal transduction histidine kinase NtrB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Signal transduction histidine kinase, nitrogen specific, NtrB id=1767175 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor signal transduction histidine kinase
13_1_40cm_scaffold_185_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4914..5282)
DNA (369bp) protein (123aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_scaffold_185_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5279..6724)
DNA (1446bp) protein (482aa)
putative two-component histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine kinase id=1767179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase
13_1_40cm_scaffold_185_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6721..7152)
DNA (432bp) protein (144aa)
thioesterase superfamily protein; K02614 acyl-CoA thioesterase [EC:3.1.2.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thioesterase; phenylacetic acid degradation protein; ComA id=14625781 bin=bin7_NC10_sister species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_185_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7252..8229
DNA (978bp) protein (326aa)
luciferase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases id=3763002 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium HF0200_06I16 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase-like protein
13_1_40cm_scaffold_185_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8303..9448
DNA (1146bp) protein (382aa)
cofG; FO synthase subunit 1; K11779 FO synthase [EC:2.5.1.-] Tax=GWA2_Rokubacteria_73_35_curated
FO synthase subunit 1 id=3763000 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cofG; FO synthase subunit 1
13_1_40cm_scaffold_185_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9426..10700
DNA (1275bp) protein (425aa)
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-)
FO synthase subunit 2 id=3762998 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_185_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10769..11056
DNA (288bp) protein (96aa)
hupB; transcriptional dual regulator HU-beta; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transcriptional dual regulator HU-beta id=3762996 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hupB; transcriptional dual regulator HU-beta
13_1_40cm_scaffold_185_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11043..11594
DNA (552bp) protein (184aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=2338861 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_185_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11602..12549
DNA (948bp) protein (316aa)
LPPG:FO 2-phospho-L-lactate transferase; K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] Tax=GWA2_Rokubacteria_73_35_curated
2-phospho-L-lactate transferase id=2615052 bin=GWC2_Methylomirabilis_70_24 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
LPPG:FO 2-phospho-L-lactate transferase
13_1_40cm_scaffold_185_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12546..13211
DNA (666bp) protein (222aa)
2-phospho-L-lactate guanylyltransferase CofC; K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-phospho-L-lactate guanylyltransferase id=2615049 bin=GWC2_Methylomirabilis_70_24 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
2-phospho-L-lactate guanylyltransferase
13_1_40cm_scaffold_185_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13208..13963
DNA (756bp) protein (252aa)
coenzyme F420-0 gamma-glutamyl ligase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
coenzyme F420-0 gamma-glutamyl ligase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] id=14628085 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
coenzyme F420-0 gamma-glutamyl ligase (EC:6.3.2.-)
13_1_40cm_scaffold_185_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13973..14683
DNA (711bp) protein (237aa)
NADPH-dependent F420 reductase; K06988 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADPH-dependent F420 reductase id=2338864 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADPH-dependent F420 reductase
13_1_40cm_scaffold_185_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14707..15744
DNA (1038bp) protein (346aa)
malate/L-lactate dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Malate/L-lactate dehydrogenase id=2338865 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
malate/L-lactate dehydrogenase
13_1_40cm_scaffold_185_19
Cylindrospermum stagnale, Cylindrospermum, Nostocales, Cyanobacteria, Bacteria

Not on your lists

15782..16192
DNA (411bp) protein (137aa)
PAS domain S-box n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WWN0_9NOST
PAS domain S-box
PAS domain S-box {ECO:0000313|EMBL:AFZ24593.1}; TaxID=56107 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermum.;" source="Cylindrospermum stagnale PCC 7417.;"
13_1_40cm_scaffold_185_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16230..16679)
DNA (450bp) protein (150aa)
hypothetical protein id=2338870 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_185_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16676..17440)
DNA (765bp) protein (255aa)
gph; phosphoglycolate phosphatase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hydrolase, haloacid dehalogenase-like family id=2338871 bin=GWA2_Methylomirabilis_73_35 species=Chlorobium chlorochromatii genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_185_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17589..17984)
DNA (396bp) protein (132aa)
class V aminotransferase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
class V aminotransferase (EC:2.8.1.7)
Aminotransferase class V id=2338873 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_185_23
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(18671..18835)
DNA (165bp) protein (55aa)
SirA family protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_1_40cm_scaffold_185_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

18891..19841
DNA (951bp) protein (317aa)
diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Diguanylate cyclase id=2338959 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
diguanylate cyclase
13_1_40cm_scaffold_185_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19895..20896
DNA (1002bp) protein (334aa)
response regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
response regulator receiver modulated metal dependent phosphohydrolase id=14626650 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase
13_1_40cm_scaffold_185_26
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21017..21865)
DNA (849bp) protein (283aa)
dienelactone hydrolase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
Carboxymethylenebutenolidase id=4712286 bin=GWC2_Methylomirabilis_70_16 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dienelactone hydrolase-like enzyme
13_1_40cm_scaffold_185_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22001..22492
DNA (492bp) protein (164aa)
id=4885132 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14625322 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_185_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(22517..23251)
DNA (735bp) protein (245aa)
hypothetical protein; K07090 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4766447 bin=GWC2_Methylomirabilis_70_16 species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_185_29
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

23311..24171
DNA (861bp) protein (287aa)
metallo-beta-lactamase family protein id=14626395 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
metallo-beta-lactamase family protein Tax=CSP1_6_Rokubacteria
metallo-beta-lactamase family protein
13_1_40cm_scaffold_185_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24140..26980)
DNA (2841bp) protein (947aa)
glpC; D-lactate dehydrogenase (cytochrome) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glpC; D-lactate dehydrogenase (cytochrome) id=14627254 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
glpC; D-lactate dehydrogenase (cytochrome)
Displaying items 1-30 of 53 in total

View Taxonomy