ggKbase home page

13_1_40cm_scaffold_5512

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_5512_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1..669)
DNA (669bp) protein (223aa)
amidohydrolase 3; K15358 enamidase [EC:3.5.2.18] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Amidohydrolase 3 n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L3H1_THERP
amidohydrolase 3
13_1_40cm_scaffold_5512_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(669..2105)
DNA (1437bp) protein (479aa)
4-hydroxyphenylacetate 3-hydroxylase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7M2_HYPSM
4-hydroxyphenylacetate 3-hydroxylase
4-hydroxyphenylacetate 3-hydroxylase {ECO:0000313|EMBL:CCB63495.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hypho
13_1_40cm_scaffold_5512_3
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(2111..3628)
DNA (1518bp) protein (506aa)
Amidohydrolase n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EWF9_EMTOG
amidohydrolase Tax=RBG_13_Actinobacteria_35_12_curated
amidohydrolase
13_1_40cm_scaffold_5512_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3726..4238
DNA (513bp) protein (171aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=2545784 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_5512_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4235..4774
DNA (540bp) protein (180aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=2821348 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_5512_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

4771..5433
DNA (663bp) protein (221aa)
id=2724780 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=2724780 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_5512_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5430..6650
DNA (1221bp) protein (407aa)
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Extracellular ligand-binding receptor id=2724781 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
branched-chain amino acid ABC transporter, periplasmic binding protein
13_1_40cm_scaffold_5512_8
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7044..7466
DNA (423bp) protein (141aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX04959.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Putative uncharacterized protein id=1829176 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anoxybacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid/amide ABC transporter membrane protein 1, haat family
13_1_40cm_scaffold_5512_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7559..8437
DNA (879bp) protein (293aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Inner-membrane translocator id=2724788 bin=GWC2_Methylomirabilis_70_16 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
inner-membrane translocator
13_1_40cm_scaffold_5512_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

8437..9183
DNA (747bp) protein (249aa)
inner-membrane translocator id=2821353 bin=GWC2_Methylomirabilis_70_24 species=Halobiforma lacisalsi genus=Halobiforma taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter permease Tax=GWA2_Rokubacteria_70_23_curated
inner-membrane translocator
Displaying 10 items

View Taxonomy