ggKbase home page

13_1_40cm_scaffold_1760

Search features with annotation key words

Displaying items 1-30 of 38 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1760_1
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(1..234)
DNA (234bp) protein (78aa)
hypothetical protein id=24527215 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_1760_2
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(316..1686)
DNA (1371bp) protein (457aa)
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] id=24527216 bin=RBG_19FT_COMBO_GAL15_69_19 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
pyruvate kinase (EC:2.7.1.40)
13_1_40cm_scaffold_1760_trna_1
unknown

Not on your lists

1789..1860
DNA (72bp)
transferRNA
13_1_40cm_scaffold_1760_3
Deinococcus gobiensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

2184..3563
DNA (1380bp) protein (460aa)
Dihydroorotase-related cyclic amidohydrolase n=1 Tax=Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 / I-0) RepID=H8GV82_DEIGI
allB; Dihydroorotase-related cyclic amidohydrolase rbh
Dihydroorotase-related cyclic amidohydrolase {ECO:0000313|EMBL:AFD26757.1}; TaxID=745776 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deino
13_1_40cm_scaffold_1760_4
S_OP1_64_32, KB1, Bacteria

Not on your lists

3623..4444
DNA (822bp) protein (274aa)
Putative GntR family transcriptional regulator n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7T6_CALAS
Transcriptional regulator, GntR family Tax=S_OP1_64_32
GntR family transcriptional regulator
13_1_40cm_scaffold_1760_5
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4441..5490
DNA (1050bp) protein (350aa)
ABC transporter substrate binding protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I319_AZOC5
Uncharacterized protein {ECO:0000313|EMBL:KJB92059.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aer
ABC transporter substrate-binding protein
13_1_40cm_scaffold_1760_6
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5496..6200
DNA (705bp) protein (235aa)
Putrescine ABC transporter, permease protein, putative n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q166W0_ROSDO
Uncharacterized protein {ECO:0000313|EMBL:EWY40882.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella sti
putrescine ABC transporter permease
13_1_40cm_scaffold_1760_7
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6294..7124
DNA (831bp) protein (277aa)
Uncharacterized protein {ECO:0000313|EMBL:EWY40881.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella sti
ABC transporter permease protein id=4565335 bin=GWC2_Methylomirabilis_70_24 species=Azorhizobium caulinodans genus=Azorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter permease
13_1_40cm_scaffold_1760_8
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7121..8419
DNA (1299bp) protein (433aa)
amidohydrolase n=1 Tax=Desulfospira joergensenii RepID=UPI0003B783E4
Amidohydrolase, imidazolonepropionase {ECO:0000313|EMBL:ESP87798.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Can
amidohydrolase
13_1_40cm_scaffold_1760_9
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8416..9573
DNA (1158bp) protein (386aa)
Put. Sugar isomerase domain containing protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FN26_SORC5
Uncharacterized protein {ECO:0000313|EMBL:ETX05106.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
sugar isomerase
13_1_40cm_scaffold_1760_10
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9626..10693
DNA (1068bp) protein (356aa)
ABC transporter ATP-binding component n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AU62_AZOBR
ABC transporter ; ATP-binding component
Spermidine/putrescine ABC transporter ATPase {ECO:0000313|EMBL:AIB14949.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" sourc
13_1_40cm_scaffold_1760_11
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

10690..11640
DNA (951bp) protein (317aa)
Carbohydrate kinase-like protein n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZHU4_ROSLO
hypothetical protein Tax=RBG_16_Chloroflexi_48_8_curated
carbohydrate kinase-like protein
13_1_40cm_scaffold_1760_12
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11637..12737
DNA (1101bp) protein (367aa)
glucosamine--fructose-6-phosphate aminotransferase (isomerizing) (EC:2.6.1.16)
SIS domain protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EPH5_9FIRM
SIS domain protein {ECO:0000313|EMBL:EEQ60055.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
13_1_40cm_scaffold_1760_13
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12787..13833
DNA (1047bp) protein (349aa)
Extracellular solute-binding protein family 1 n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XKW3_9CHRO
Uncharacterized protein {ECO:0000313|EMBL:EWY40886.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella sti
extracellular solute-binding protein family 1
13_1_40cm_scaffold_1760_14
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

13904..14755
DNA (852bp) protein (284aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BC65_PARDP
ABC transporter permease {ECO:0000313|EMBL:KIF25391.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
binding-protein-dependent transport systems inner membrane component
13_1_40cm_scaffold_1760_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14781..15650
DNA (870bp) protein (290aa)
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E45CE2
ABC transporter permease protein {ECO:0000313|EMBL:KFC76060.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport systems inner membrane component
13_1_40cm_scaffold_1760_16
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15647..17191
DNA (1545bp) protein (515aa)
Amidohydrolase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AA95_STAND
Amidohydrolase {ECO:0000313|EMBL:KHJ53297.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
amidohydrolase
13_1_40cm_scaffold_1760_17
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

17170..17913
DNA (744bp) protein (248aa)
FbaB; fructose-bisphosphate aldolase (EC:4.1.2.13)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TVI0_METKA
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase {ECO:0000256|HAMAP-Rule:MF_00960}; Short=ADH synthase {ECO:0000256|HAMAP-Rule:MF_00960};; Short=ADHS {ECO:0000256|HAMAP-Rule:MF_00960};; Short=ADT
13_1_40cm_scaffold_1760_18
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

18723..19451
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EJW5_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF84977.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source
hypothetical protein
13_1_40cm_scaffold_1760_19
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19894..20583
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-J15 RepID=UPI00035CD620
Uncharacterized protein {ECO:0000313|EMBL:KHD09058.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomarg
hypothetical protein
13_1_40cm_scaffold_1760_20
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

20712..21869
DNA (1158bp) protein (386aa)
type III restriction-modification system, Mod subunit n=3 Tax=Aminicenantes RepID=UPI0003B7B1B6
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
adenine-specific DNA methylase
13_1_40cm_scaffold_1760_21
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

22008..24431
DNA (2424bp) protein (808aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon Gpl RepID=T0N6S6_9EURY
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
hypothetical protein
13_1_40cm_scaffold_1760_22
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

24847..25647
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000367A79D
glycosyl hydrolase family protein
Glycosyl hydrolase BNR repeat-containing protein {ECO:0000313|EMBL:ADH64528.1}; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiotherm
13_1_40cm_scaffold_1760_23

Not on your lists

25661..25903
DNA (243bp) protein (81aa)
BNR/Asp-box repeat protein n=2 Tax=Saccharomonospora azurea RepID=H8G792_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:AIA12060.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_40cm_scaffold_1760_24
CSP1_5_NC10, NC10, Bacteria

Not on your lists

25900..26196
DNA (297bp) protein (99aa)
hypothetical protein id=14428964 bin=bin3_NC10 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
hypothetical protein
13_1_40cm_scaffold_1760_25
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26307..26996)
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Amycolatopsis methanolica RepID=UPI00037F3A3A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ26843.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
13_1_40cm_scaffold_1760_26
Photobacterium aphoticum, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27200..27484
DNA (285bp) protein (95aa)
Proline iminopeptidase {ECO:0000313|EMBL:GAL02508.1}; EC=3.4.11.5 {ECO:0000313|EMBL:GAL02508.1};; TaxID=754436 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photob
Proline iminopeptidase n=1 Tax=Grimontia sp. AK16 RepID=R1I9X9_9GAMM
prolyl aminopeptidase
13_1_40cm_scaffold_1760_27
Cloacibacillus evryensis, Cloacibacillus, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(27668..28870)
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Desulfospira joergensenii RepID=UPI0003B59E71
Amidohydrolase, imidazolonepropionase {ECO:0000313|EMBL:EXG78435.1}; TaxID=866499 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Cloacibacillus.;" source="Cloacibacillus
amidohydrolase
13_1_40cm_scaffold_1760_28
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(28891..29787)
DNA (897bp) protein (299aa)
oligopeptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
Binding-protein-dependent transport systems inner membrane component id=3716427 bin=GWF2_Methylomirabilis_70_14 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_1760_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(29787..30704)
DNA (918bp) protein (306aa)
Dipeptide transport system permease DppB id=4948701 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
dppB; dipeptide transport system permease DppB; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter permease
Displaying items 1-30 of 38 in total

View Taxonomy