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13_1_40cm_scaffold_257

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_257_1
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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3..350
DNA (348bp) protein (116aa)
hypothetical protein id=24448822 bin=RBG_19FT_COMBO_GAL15_69_19 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
putative DNA-binding protein
13_1_40cm_scaffold_257_2
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

350..1000
DNA (651bp) protein (217aa)
hypothetical protein id=24448823 bin=RBG_19FT_COMBO_GAL15_69_19 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
hypothetical protein
13_1_40cm_scaffold_257_3
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists


993..2324
DNA (1332bp) protein (444aa)
signal recognition particle protein; K03106 signal recognition particle subunit SRP54 id=24448824 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
signal recognition particle protein; K03106 signal recognition particle subunit SRP54 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
signal recognition particle protein
13_1_40cm_scaffold_257_4
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists


2392..2658
DNA (267bp) protein (89aa)
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 id=24448825 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
30S ribosomal protein S16
13_1_40cm_scaffold_257_5
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2683..2913
DNA (231bp) protein (77aa)
UPF0109 protein CDLVIII_1781 n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYH6_9CLOT
UPF0109 protein CDLVIII_1781 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
13_1_40cm_scaffold_257_6
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

2992..3396
DNA (405bp) protein (135aa)
hypothetical protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
hypothetical protein id=14632410 bin=bin9_gal15 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
hypothetical protein
13_1_40cm_scaffold_257_7
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

3408..3923
DNA (516bp) protein (172aa)
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM id=24448828 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
16S rRNA processing protein RimM
13_1_40cm_scaffold_257_8
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

3928..4683
DNA (756bp) protein (252aa)
tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] id=24448829 bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
tRNA (guanine-N1)-methyltransferase
13_1_40cm_scaffold_257_9
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists


5101..5442
DNA (342bp) protein (114aa)
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 id=24448830 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
rplS; 50S ribosomal protein L19
13_1_40cm_scaffold_257_10
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

5460..6104
DNA (645bp) protein (215aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] id=24448831 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermodesulfobium narugense genus=Thermodesulfobium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
signal peptidase I
13_1_40cm_scaffold_257_11
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

6194..7003
DNA (810bp) protein (270aa)
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] id=24448832 bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfitobacterium sp. PCE1 genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
ribonuclease HII (EC:3.1.26.4)
13_1_40cm_scaffold_257_12
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(6993..7526)
DNA (534bp) protein (178aa)
id=24448833 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
id=24448833 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_257_13
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

7882..10026
DNA (2145bp) protein (715aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] id=14632458 bin=bin9_gal15 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
DNA topoisomerase I
13_1_40cm_scaffold_257_14
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

10065..11033
DNA (969bp) protein (323aa)
xerC; tyrosine recombinase; K03733 integrase/recombinase XerC id=24448840 bin=RBG_19FT_COMBO_GAL15_69_19 species=Brevibacillus sp. CF112 genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
xerC; tyrosine recombinase; K03733 integrase/recombinase XerC Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
xerC; tyrosine recombinase
13_1_40cm_scaffold_257_15
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists


11274..12131
DNA (858bp) protein (286aa)
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 id=14632459 bin=bin9_gal15 species=Subdoligranulum sp. 4_3_54A2FAA genus=Subdoligranulum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=CSP1_3_Armatimonadetes
rpsB; 30S ribosomal protein S2
13_1_40cm_scaffold_257_16
Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

12136..12729
DNA (594bp) protein (198aa)
Elongation factor Ts n=4 Tax=Caldicellulosiruptor RepID=E4Q7M0_CALH1
translation elongation factor ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=632335 species="Bacteria; Firmicutes; Clostridia; Thermoana
13_1_40cm_scaffold_257_17
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

12791..13564
DNA (774bp) protein (258aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] id=14632461 bin=bin9_gal15 species=Anaeromusa acidaminophila genus=Anaeromusa taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=CSP1_3_Armatimonadetes
pyrH; uridylate kinase (EC:2.7.4.-)
13_1_40cm_scaffold_257_18
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

13561..14118
DNA (558bp) protein (186aa)
ribosome recycling factor; K02838 ribosome recycling factor id=14632462 bin=bin9_gal15 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
ribosome recycling factor; K02838 ribosome recycling factor Tax=CSP1_3_Armatimonadetes
ribosome recycling factor
13_1_40cm_scaffold_257_19
unknown

Not on your lists

14146..14379
DNA (234bp) protein (78aa)

This feature has no annotations

13_1_40cm_scaffold_257_20
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

14372..15136
DNA (765bp) protein (255aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] id=14632464 bin=bin9_gal15 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
undecaprenyl diphosphate synthase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=CSP1_3_Armatimonadetes
UDP pyrophosphate synthase (EC:2.5.1.31)
13_1_40cm_scaffold_257_21
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

15188..15970
DNA (783bp) protein (261aa)
phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] id=24447673 bin=RBG_19FT_COMBO_GAL15_69_19 species=Sulfobacillus thermosulfidooxidans genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
phosphatidate cytidylyltransferase
13_1_40cm_scaffold_257_22
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

15978..17141
DNA (1164bp) protein (388aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] id=24447674 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
13_1_40cm_scaffold_257_23
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

17151..18200
DNA (1050bp) protein (350aa)
rasP; RIP metalloprotease RasP (EC:3.4.24.-) id=24447675 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
rasP; RIP metalloprotease RasP (EC:3.4.24.-) Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
putative membrane-associated zinc metalloprotease
13_1_40cm_scaffold_257_24
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

18212..19360
DNA (1149bp) protein (383aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] id=24447676 bin=RBG_19FT_COMBO_GAL15_69_19 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
13_1_40cm_scaffold_257_25
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

19357..20031
DNA (675bp) protein (225aa)
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein id=24447677 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
MgtC/SapB transporter
13_1_40cm_scaffold_257_26
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

20028..20711
DNA (684bp) protein (228aa)
peptidase, S54 (Rhomboid) family id=24447678 bin=RBG_19FT_COMBO_GAL15_69_19 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
peptidase, S54 (Rhomboid) family Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
rhomboid domain containing peptidase
13_1_40cm_scaffold_257_27
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

20805..22010
DNA (1206bp) protein (402aa)
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] id=24447679 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=CSP1_3_Armatimonadetes
S-adenosylmethionine synthetase (EC:2.5.1.6)
13_1_40cm_scaffold_257_28
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

22072..23193
DNA (1122bp) protein (374aa)
dipeptidyl aminopeptidase/acylaminoacyl peptidase id=24447680 bin=RBG_19FT_COMBO_GAL15_69_19 species=Halogeometricum borinquense genus=Halogeometricum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
dipeptidyl aminopeptidase/acylaminoacyl peptidase Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_257_29
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

23305..23574
DNA (270bp) protein (90aa)
FmdB family regulatory protein id=24447681 bin=RBG_19FT_COMBO_GAL15_69_19 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
FmdB family regulatory protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
hypothetical protein
13_1_40cm_scaffold_257_30
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

23637..25280
DNA (1644bp) protein (548aa)
id=24447682 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
id=24447682 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
hypothetical protein
Displaying items 1-30 of 53 in total

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