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13_1_40cm_scaffold_1846

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1846_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1..459)
DNA (459bp) protein (153aa)
putative type IV pili biogenesis protein PilQ; K02666 type IV pilus assembly protein PilQ Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
13_1_40cm_scaffold_1846_2
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(456..1037)
DNA (582bp) protein (194aa)
Putative Type IV pilus assembly protein PilP n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCZ2_9BACT
putative type IV pilus assembly protein PilP
Putative Type IV pilus assembly protein PilP {ECO:0000313|EMBL:CBK41101.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defl
13_1_40cm_scaffold_1846_3
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(1118..1735)
DNA (618bp) protein (206aa)
Putative Type IV pilus biogenesis protein PilO n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCZ1_9BACT
putative type IV pilus biogenesis protein PilO
Putative Type IV pilus biogenesis protein PilO {ECO:0000313|EMBL:CBK41100.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira de
13_1_40cm_scaffold_1846_4
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(1737..2288)
DNA (552bp) protein (184aa)
Putative Type IV pilus biogenesis protein PilN n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCZ0_9BACT
putative type IV pilus biogenesis protein PilN; K02663 type IV pilus assembly protein PilN Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
putative type IV pilus biogenesis protein PilN
13_1_40cm_scaffold_1846_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(2285..3388)
DNA (1104bp) protein (368aa)
Type IV pilus biogenesis protein PilM n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY9_9BACT
pilM; type IV pilus biogenesis protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pilM; type IV pilus biogenesis protein PilM
13_1_40cm_scaffold_1846_6
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(3758..4624)
DNA (867bp) protein (289aa)
UPF0042 nucleotide-binding protein yhbJ n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY7_9BACT
yhbJ; hypothetical protein; K06958 UPF0042 nucleotide-binding protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
yhbJ; hypothetical protein
13_1_40cm_scaffold_1846_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(4858..6366)
DNA (1509bp) protein (503aa)
RNA polymerase, sigma-54 (Sigma N) factor n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY5_9BACT
rpoN; RNA polymerase, sigma-54 (sigma N) factor; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpoN; RNA polymerase, sigma-54 (sigma N) factor
13_1_40cm_scaffold_1846_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(6394..7140)
DNA (747bp) protein (249aa)
lptB; putative lipopolysaccharide ABC transporter ATPase (EC:3.6.3.-); K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
lptB; putative lipopolysaccharide ABC transporter ATPase (EC:3.6.3.-)
ABC-type transport system, ATPase component, putative lipopolysaccharide transport system n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY4_9BACT
13_1_40cm_scaffold_1846_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(7183..7794)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY3_9BACT
hypothetical protein; K09774 lipopolysaccharide export system protein LptA Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_scaffold_1846_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(7769..8335)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY2_9BACT
hypothetical protein; K11719 lipopolysaccharide export system protein LptC Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_scaffold_1846_11
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


comp(8521..8997)
DNA (477bp) protein (159aa)
50S ribosomal protein L17 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY1_9BACT
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus
13_1_40cm_scaffold_1846_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(9011..9961)
DNA (951bp) protein (317aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCY0_9BACT
13_1_40cm_scaffold_1846_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


comp(10046..10672)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX9_9BACT
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpsD; 30S ribosomal protein S4
13_1_40cm_scaffold_1846_14
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


comp(10766..11149)
DNA (384bp) protein (128aa)
30S ribosomal protein S11 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX8_9BACT
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpsK; 30S ribosomal protein S11
13_1_40cm_scaffold_1846_15
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


comp(11181..11579)
DNA (399bp) protein (133aa)
30S ribosomal protein S13 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX7_9BACT
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315, ECO:0000313|EMBL:CBK41086.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus N
13_1_40cm_scaffold_1846_16
Facklamia hominis, Facklamia, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11983..12126)
DNA (144bp) protein (48aa)
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=883111 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Facklamia.;" source="Facklamia hominis CCUG 3
13_1_40cm_scaffold_1846_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(12157..12909)
DNA (753bp) protein (251aa)
map; methionyl aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
map; methionyl aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX4_9BACT
13_1_40cm_scaffold_1846_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(12906..13562)
DNA (657bp) protein (219aa)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX3_9BACT
13_1_40cm_scaffold_1846_19
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


comp(13571..14818)
DNA (1248bp) protein (416aa)
Protein translocase subunit SecY n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCX2_9BACT
secY; preprotein translocase, membrane subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
secY; preprotein translocase, membrane subunit SecY
Displaying 19 items

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