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13_1_40cm_scaffold_4

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Displaying items 1-30 of 86 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_4_1
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1..807)
DNA (807bp) protein (269aa)
dehydrogenase n=1 Tax=Paenibacillus ginsengihumi RepID=UPI0003643BF8
Dehydrogenase {ECO:0000313|EMBL:KIL42518.1}; TaxID=1590651 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
hypothetical protein
13_1_40cm_scaffold_4_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(807..1700)
DNA (894bp) protein (298aa)
Rhizopine catabolism protein MocA {ECO:0000313|EMBL:EYR81593.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR81593.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiac
Inositol 2-dehydrogenase (EC:1.1.1.18)
Rhizopine catabolism protein MocA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2W0_9RHIZ
13_1_40cm_scaffold_4_3
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1741..2646)
DNA (906bp) protein (302aa)
2-keto-myo-inositol dehydratase {ECO:0000313|EMBL:ABK53588.1}; EC=4.2.1.44 {ECO:0000313|EMBL:ABK53588.1};; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus
2-keto-myo-inositol dehydratase n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LVX8_ACIC1
xylose isomerase domain-containing protein
13_1_40cm_scaffold_4_4
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(2675..3793)
DNA (1119bp) protein (373aa)
SpcB n=1 Tax=Streptomyces netropsis RepID=Q9S1M0_STRNE
oxidoreductase domain-containing protein Tax=RBG_16_NC10_65_8_curated
oxidoreductase domain-containing protein
13_1_40cm_scaffold_4_5
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3866..4906)
DNA (1041bp) protein (347aa)
LacI family transcriptional repressor n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67RD8_SYMTH
LacI family transcriptional repressor
LacI family transcriptional repressor {ECO:0000313|EMBL:BAD39755.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacteri
13_1_40cm_scaffold_4_6
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(4903..5871)
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00031C7076
xylose isomerase domain-containing protein
xylose isomerase Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
13_1_40cm_scaffold_4_7

Not on your lists

comp(5901..6854)
DNA (954bp) protein (318aa)
Lipase/esterase n=1 Tax=uncultured bacterium RepID=Q6RJL0_9BACT
Lipase/esterase {ECO:0000313|EMBL:AAS77247.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
alpha/beta hydrolase
13_1_40cm_scaffold_4_8
RBG_16_Chloroflexi_56_11_curated, Chloroflexi, Bacteria

Not on your lists

7036..8091
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037BB0EB
MFS-type transporter Tax=RBG_16_Chloroflexi_56_11_curated
major facilitator superfamily protein
13_1_40cm_scaffold_4_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8075..9025)
DNA (951bp) protein (317aa)
Transcriptional regulator, LacI family n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A1H4_THECD
regulatory protein LacI
Regulatory protein LacI {ECO:0000313|EMBL:AHG92061.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_4_10
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

9187..10182
DNA (996bp) protein (332aa)
dehydrogenase; K00010 myo-inositol 2-dehydrogenase [EC:1.1.1.18] Tax=GWC2_RIF_CHLX_73_18_curated
Inositol 2-dehydrogenase id=4413318 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
dehydrogenase
13_1_40cm_scaffold_4_11
Rhodococcus sp. JVH1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10179..11087
DNA (909bp) protein (303aa)
Xylose isomerase-like TIM barrel family protein n=1 Tax=Rhodococcus sp. JVH1 RepID=J1RB95_9NOCA
Xylose isomerase-like TIM barrel family protein {ECO:0000313|EMBL:EJJ01529.1}; TaxID=745408 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. J
xylose isomerase
13_1_40cm_scaffold_4_12
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11084..12064
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI0003696695
Simple sugar transporter substrate-binding protein {ECO:0000313|EMBL:EWM15136.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria
ABC-type sugar transport system, periplasmic component
13_1_40cm_scaffold_4_13
Rhodoluna lacicola, Rhodoluna, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12122..13207
DNA (1086bp) protein (362aa)
ribose ABC transporter permease n=1 Tax=Patulibacter americanus RepID=UPI0003B6B6DF
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component {ECO:0000313|EMBL:AIC48134.1}; TaxID=529884 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Luna
13_1_40cm_scaffold_4_14
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

13218..14075
DNA (858bp) protein (286aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:AEB12652.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AEB12652.1};; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Ma
sugar ABC transporter ATP-binding protein n=1 Tax=Patulibacter americanus RepID=UPI0003B734C4
13_1_40cm_scaffold_4_15
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

14072..15952
DNA (1881bp) protein (627aa)
Thiamine pyrophosphate enzyme, central region n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVA0_RUBXD
thiamine pyrophosphate enzyme, central region
Thiamine pyrophosphate enzyme, central region {ECO:0000313|EMBL:ABG04678.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubroba
13_1_40cm_scaffold_4_16
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

15949..16758
DNA (810bp) protein (270aa)
Myo-inositol catabolism IolB region n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVA1_RUBXD
myo-inositol catabolism IolB region
Myo-inositol catabolism IolB region {ECO:0000313|EMBL:ABG04677.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" so
13_1_40cm_scaffold_4_17
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(16764..17117)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F050_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB50026.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woe
13_1_40cm_scaffold_4_18
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17124..17828
DNA (705bp) protein (235aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LVA7_ACIC1
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABK53367.1}; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Aci
13_1_40cm_scaffold_4_19
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

17829..19178
DNA (1350bp) protein (450aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sp
Histidine kinase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5Q4_SPHTD
histidine kinase
13_1_40cm_scaffold_4_20
Catelliglobosispora koreensis, Catelliglobosispora, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

19202..20287
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI000365D606
13_1_40cm_scaffold_4_21
unknown

Not on your lists

20284..20673
DNA (390bp) protein (130aa)

This feature has no annotations

13_1_40cm_scaffold_4_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(20670..21122)
DNA (453bp) protein (151aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Paenibacillus curdlanolyticus YK9 RepID=E0IAC6_9BACL
response regulator receiver modulated metal dependent phosphohydrolase; K07814 putative two-component system response regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
response regulator receiver protein
13_1_40cm_scaffold_4_23
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21112..23325)
DNA (2214bp) protein (738aa)
Two-component hybrid sensor and histidine kinase regulator (EC:2.7.13.3)
Two-component hybrid sensor and histidine kinase regulator {ECO:0000313|EMBL:CCG02701.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CCG02701.1};; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilale
Two-component hybrid sensor and histidine kinase regulator n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RP40_BLASD
13_1_40cm_scaffold_4_24
unknown

Not on your lists

23549..23644
DNA (96bp) protein (32aa)

This feature has no annotations

13_1_40cm_scaffold_4_25
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

23715..25097
DNA (1383bp) protein (461aa)
XRE family transcriptional regulator Tax=RBG_16_Armatimonadetes_67_12_curated
XRE family transcriptional regulator id=14632974 bin=bin9_gal15 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
hypothetical protein
13_1_40cm_scaffold_4_26
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

25228..26187
DNA (960bp) protein (320aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein id=14428720 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
response regulator
13_1_40cm_scaffold_4_27
Candidatus Jettenia caeni, Candidatus Jettenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

26207..28810
DNA (2604bp) protein (868aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=247490 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae.;" s
Two-component sensor kinase n=1 Tax=planctomycete KSU-1 RepID=I3IJN9_9PLAN
Signal transduction histidine kinase
13_1_40cm_scaffold_4_28
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

28807..29187
DNA (381bp) protein (127aa)
response regulator receiver protein id=14430354 bin=bin3_NC10 species=Azoarcus toluclasticus genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
putative two-component sensor protein/histidine protein kinase Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
multi-sensor hybrid histidine kinase
13_1_40cm_scaffold_4_29
CSP1_5_NC10, NC10, Bacteria

Not on your lists

29234..29617
DNA (384bp) protein (128aa)
response regulator receiver sensor signal transduction histidine kinase (EC:2.7.13.3)
response regulator receiver protein id=14430354 bin=bin3_NC10 species=Azoarcus toluclasticus genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
response regulator receiver protein Tax=CSP1_5_NC10
13_1_40cm_scaffold_4_30
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29614..30366
DNA (753bp) protein (251aa)
Response regulator receiver protein n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G5Q3_CHLAD
response regulator receiver protein
Tax=BJP_08E140C01_Clostridiales_46_19
Displaying items 1-30 of 86 in total

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