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13_1_40cm_scaffold_2253

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2253_1
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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comp(3..227)
DNA (225bp) protein (75aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
putative integral membrane protein
Integral membrane protein id=4750929 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_2253_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(224..643)
DNA (420bp) protein (140aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=861299 species="Bacteria; Ge
Malate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A902_GEMAT
Malate dehydrogenase
13_1_40cm_scaffold_2253_3

Not on your lists

772..1116
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QN76_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI08697.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
13_1_40cm_scaffold_2253_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1103..2122)
DNA (1020bp) protein (340aa)
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein id=14626248 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
moaA; molybdenum cofactor biosynthesis protein A
13_1_40cm_scaffold_2253_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2112..2549)
DNA (438bp) protein (146aa)
molybdopterin biosynthesis MoaE protein; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
molybdopterin (MPT) converting factor, subunit 2 n=1 Tax=Thermus islandicus RepID=UPI0003B77ECE
molybdopterin biosynthesis MoaE protein
13_1_40cm_scaffold_2253_6
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(2546..2797)
DNA (252bp) protein (84aa)
Molybdopterin synthase subunit MoaD / molybdopterin synthase subunit MoaE n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFU7_9BACT
moaD; molybdopterin converting factor, subunit 1; K03636 molybdopterin synthase sulfur carrier subunit Tax=RBG_16_Acidobacteria_68_9_curated
thiamine S protein
13_1_40cm_scaffold_2253_7
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2802..4148)
DNA (1347bp) protein (449aa)
peptidase M61 n=1 Tax=Pontibacter roseus RepID=UPI00036CB6C9
peptidase M61
Peptidase M61 {ECO:0000313|EMBL:AKD05793.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
13_1_40cm_scaffold_2253_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4653..4967)
DNA (315bp) protein (105aa)
DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A906_GEMAT
DNA-binding protein; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
histone family protein DNA-binding protein
13_1_40cm_scaffold_2253_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5034..6194)
DNA (1161bp) protein (387aa)
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A907_GEMAT
13_1_40cm_scaffold_2253_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6512..7261)
DNA (750bp) protein (250aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Triosephosphate isomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A909_GEMAT
Triosephosphate isomerase, bacterial/eukaryotic
13_1_40cm_scaffold_2253_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7258..8439)
DNA (1182bp) protein (394aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Phosphoglycerate kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A910_GEMAT
Phosphoglycerate kinase
13_1_40cm_scaffold_2253_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8436..9449)
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bact
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A911_GEMAT
glyceraldehyde-3-phosphate dehydrogenase, type I
13_1_40cm_scaffold_2253_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9460..9909)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A912_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90848.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2253_14
unknown

Not on your lists

10000..10197
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_scaffold_2253_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10160..10984)
DNA (825bp) protein (275aa)
AroE; shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25] id=24447241 bin=RBG_19FT_COMBO_GAL15_69_19 species=Methanopyrus kandleri genus=Methanopyrus taxon_order=Methanopyrales taxon_class=Methanopyri phylum=Euryarchaeota tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
aroE; shikimate 5-dehydrogenase Tax=RBG_16_Gemmatimonadetes_66_8_curated
Shikimate dehydrogenase
13_1_40cm_scaffold_2253_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10968..11438)
DNA (471bp) protein (157aa)
protein-tyrosine-phosphatase (EC:3.1.3.48); K01104 protein-tyrosine phosphatase [EC:3.1.3.48] Tax=RBG_16_Gemmatimonadetes_66_8_curated
protein-tyrosine-phosphatase (EC:3.1.3.48)
Protein-tyrosine-phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A914_GEMAT
13_1_40cm_scaffold_2253_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11435..12094)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A915_GEMAT
hypothetical protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Sua5/YciO/YrdC/YwlC family protein
13_1_40cm_scaffold_2253_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(12085..12813)
DNA (729bp) protein (243aa)
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60); K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A916_GEMAT
13_1_40cm_scaffold_2253_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(12963..13571)
DNA (609bp) protein (203aa)
DNA repair protein radA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A917_GEMAT
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA repair protein RadA
13_1_40cm_scaffold_2253_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13611..14075)
DNA (465bp) protein (155aa)
DNA repair protein radA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A917_GEMAT
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
DNA repair protein RadA
13_1_40cm_scaffold_2253_21
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(14068..15186)
DNA (1119bp) protein (373aa)
dnaB; replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
dnaB; replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A918_GEMAT
13_1_40cm_scaffold_2253_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15219..15416)
DNA (198bp) protein (66aa)
dnaB; replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_2253_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15379..15930)
DNA (552bp) protein (184aa)
putative DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative DNA glycosylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A919_GEMAT
putative DNA glycosylase
Displaying 23 items

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