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13_1_40cm_scaffold_3693

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3693_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2..403
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI0003782A42
maf; septum formation protein Maf; K06287 septum formation protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
maf; Maf-like protein
13_1_40cm_scaffold_3693_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(385..2007)
DNA (1623bp) protein (541aa)
cya; adenylate cyclase (EC:4.6.1.1); K01768 adenylate cyclase [EC:4.6.1.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
cya; adenylate cyclase (EC:4.6.1.1)
Adenylate cyclase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB53_GEMAT
13_1_40cm_scaffold_3693_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2035..3531)
DNA (1497bp) protein (499aa)
trpE; anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Anthranilate synthase component I n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB52_GEMAT
anthranilate synthase component I
13_1_40cm_scaffold_3693_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

3550..5562
DNA (2013bp) protein (671aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A514_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_scaffold_3693_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5613..7868
DNA (2256bp) protein (752aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Response regulator receiver protein id=4816030 bin=GWA2_Elusi_like_61_42 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
general secretory pathway protein E
13_1_40cm_scaffold_3693_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

7889..8332
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB51_GEMAT
NUDIX family hydrolase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
NUDIX hydrolase
13_1_40cm_scaffold_3693_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8579..10744)
DNA (2166bp) protein (722aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GBT4_CHLAD
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
multi-sensor hybrid histidine kinase
13_1_40cm_scaffold_3693_8
unknown

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10857..11447
DNA (591bp) protein (197aa)

This feature has no annotations

13_1_40cm_scaffold_3693_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(11404..11976)
DNA (573bp) protein (191aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_scaffold_3693_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(11973..12383)
DNA (411bp) protein (137aa)
Probable GTP-binding protein EngB n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WHB3_9ACTN
ribosome biogenesis GTP-binding protein YsxC Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
GTP-binding protein
13_1_40cm_scaffold_3693_11
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(12542..13621)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003658ED9
group 1 glycosyl transferase
Tax=BJP_IG2069_Ignavibacteriae_38_11
13_1_40cm_scaffold_3693_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13678..14535)
DNA (858bp) protein (286aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB47_GEMAT
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ATP-dependent Clp protease ATP-binding subunit clpX
13_1_40cm_scaffold_3693_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14595..14885)
DNA (291bp) protein (97aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB47_GEMAT
ATP-dependent Clp protease ATP-binding subunit clpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacte
13_1_40cm_scaffold_3693_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14927..16747)
DNA (1821bp) protein (607aa)
PREDICTED: hypothetical protein LOC100749102 n=1 Tax=Bombus impatiens RepID=UPI00022CAA7D
tig; trigger factor; K03545 trigger factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Trigger factor
13_1_40cm_scaffold_3693_trna_1
unknown

Not on your lists

comp(16843..16924)
DNA (82bp)
transferRNA
13_1_40cm_scaffold_3693_15
unknown

Not on your lists

16977..17666
DNA (690bp) protein (230aa)

This feature has no annotations

13_1_40cm_scaffold_3693_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17719..18705
DNA (987bp) protein (329aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] id=24489205 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome c oxidase subunit II (EC:1.9.3.1)
13_1_40cm_scaffold_3693_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

18702..20495
DNA (1794bp) protein (598aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] id=24489206 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1)
13_1_40cm_scaffold_3693_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

20496..20774
DNA (279bp) protein (93aa)
ctaE; cytochrome c oxidase subunit III (EC:1.9.3.1); K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
cytochrome c oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-] id=24489207 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ctaE; cytochrome c oxidase subunit III (EC:1.9.3.1)
Displaying 19 items

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